Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 816 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  371 bits (953), Expect = e-107
 Identities = 247/810 (30%), Positives = 418/810 (51%), Gaps = 25/810 (3%)

Query: 14  LRWSL--SEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVFVSG 71
           + W L   E+  GQL  + +A+TL + S+  L  +++R++  I  Q    + AD +  S 
Sbjct: 5   IAWKLFKRELLQGQLLLIILAITLAVFSVSGLARVSERLQLAINGQASKFIAADRIINSP 64

Query: 72  NPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLRGEMRLSDGQQT 131
            PL + +L        +     +F +MA++    QLVTVKAV   YPL+G + LSDG  T
Sbjct: 65  VPLDDKILAKADALGLRHVASMQFNSMAYAGDAFQLVTVKAVGEGYPLKGVIELSDGP-T 123

Query: 132 FNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQMPSVYIH 191
                ++QLW E R+   LG      + +G+A+F +S E+   P   FNPF   P V + 
Sbjct: 124 DKLPKADQLWYETRLGGILGYP--KQLELGNANFSLSAEIARLPDAGFNPFASSPVVLMR 181

Query: 192 ASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVS--LTASDRWRDQESG-SRTNEVF 248
             DV KTG IQPGSRV +     G+   +++ + +V   L  S RW D +SG S      
Sbjct: 182 LQDVPKTGVIQPGSRVSYIHQFAGEADQLKAFEAEVKPLLNNSQRWVDVQSGDSPIAGAV 241

Query: 249 ERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWLALQVGL 308
           +R +++L L   + I +A   + +  Q Y       +AMLK+ GAS R +R    L + L
Sbjct: 242 KRAERFLLLASLLGIALACAAIGIAAQRYCQRHFDVVAMLKTFGASSRQIRILFGLHLLL 301

Query: 309 LLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYG---LRPLWIALASSFLIAVPALGI 365
           + +  + LG + G  L++L+       LP  + +Y     RP+ + +A+  + A      
Sbjct: 302 VTLAGIALGLIGGFLLDTLISA----YLPASISAYSPPLFRPIALGVATGLISAFMFSAY 357

Query: 366 PLGRLLSVSAVAVMQPVTAQTRWQRNLLLIMVPIVPLLLVYWQNQ---LIWIVLIGIVVL 422
           PL RLL++  + V+Q      +    L L++      LL Y  +Q   L   V+  +++L
Sbjct: 358 PLMRLLAIPPLRVLQRQLEGIQLGMWLHLVLSLSAMALLGYLYSQSLVLTLTVVAAVMLL 417

Query: 423 FAMLAVVSVLVTRL---LAKLPLNPAMALALSRINRSGAASGLQFGALALSLMLLAIIWL 479
             +L++   L+ R    +     NP M LAL+ + R    + +Q    + +L+LL  I  
Sbjct: 418 GVLLSLFGFLLIRAGHSVGMKTTNP-MQLALAGLRRRARQNAVQLVGFSSALVLLLTIIA 476

Query: 480 VRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDTASIERSAAYPIMRGRLTHING 539
           +R DLL +W + LPE +PN F +NI+  E+A   A      ++ +  YP++RGRL  ING
Sbjct: 477 LRQDLLDEWHKQLPEQSPNYFLVNIAPEEQAPLEAYFSDNRVKATDIYPVIRGRLVAING 536

Query: 540 QE--AKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEW-QSQNGVSVEQEVASDLG 596
           ++  + + A  G +    + RELNLTW   LP  N +L G + Q  + VSVE  VA  LG
Sbjct: 537 EKLISAEQADEGAQGRVGISRELNLTWRTSLPPNNELLSGHFNQKADEVSVESGVAERLG 596

Query: 597 LKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLISFRIQPE 656
           + LGD L+++I++Q ++ +V +IR V W  M+PNF+ IF PD +     + + SF +   
Sbjct: 597 IGLGDELSYVIDNQPLTVKVASIRAVHWETMQPNFFMIFHPDALAPFAYTSMASFYLDDS 656

Query: 657 HDALLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLIFTLLRLS 716
              ++ +L ++ PTVS++D+  M  +++ ++ Q+  S+T++  L +LA  L++       
Sbjct: 657 KRPMVIELIKRFPTVSIIDVGAMVKQLRQIIDQVSLSLTLVLVLVLLASSLVMIAQTEAG 716

Query: 717 LSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSADAVVAAVMKWGFSLTP 776
           ++ RQ+E+ + RT GAS   +      E+ ++ L+ GL+A++ A+  +  +    F L  
Sbjct: 717 MATRQRELAVLRTFGASGWLLRMATALEFALLGLIAGLLAAIVAEFTIYLLKTQVFELVV 776

Query: 777 SLHMALWFVLPALTFCTLAAVVSSLLKRLL 806
            +H   W + P      +A + +   ++LL
Sbjct: 777 YMHWDWWLLAPLAGAAIVALLGTWRCRQLL 806