Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 50.4 bits (119), Expect = 2e-10
 Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 24/222 (10%)

Query: 152 VDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQMPSVYIHASDVDKTGAIQPGSRVQFSL 211
           +DIGD +TI D  + V G +LEE G   NP +   SV +     ++   I     +    
Sbjct: 165 IDIGDKITINDKKYKVIG-ILEETG---NP-RTENSVILSKDVGEELFEINNEYNMMIVS 219

Query: 212 FMTGDDSAI--ESIKQQVSLTASDR----WRDQESGSRTNEVFERTQQYLSLTVAIVILM 265
             +G+D  +  E IK ++  +  D        ++     N +FE    +L     I +L+
Sbjct: 220 VRSGEDVNLVSEEIKDELEDSRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLV 279

Query: 266 AATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWLALQVGLLLVFAVVLGSVIGVGLE 325
            A  +  T    +  R   I +LK+LGA    +     ++ G L +F  ++G+++G+ + 
Sbjct: 280 GAVGISNTMHMSILERRKDIGILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIA 339

Query: 326 SLLRLPLKDLLPDPLPSYGLRPLWIA-------LASSFLIAV 360
             +           +  YGL   WI+       L  SF++ +
Sbjct: 340 KAIEYIA------AISGYGLIRAWISWELIVGVLVFSFVVGI 375



 Score = 41.6 bits (96), Expect = 9e-08
 Identities = 21/103 (20%), Positives = 49/103 (47%)

Query: 665 SRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAALGVLAGVLLIFTLLRLSLSQRQQEI 724
           SR     S++    +   I ++   +   +  +A + +L G + I   + +S+ +R+++I
Sbjct: 240 SRGDENFSVLTAEQLAESINSIFEVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDI 299

Query: 725 RLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSADAVVAAV 767
            + + LGA    ++     E G + L GG+V ++    +  A+
Sbjct: 300 GILKALGAENTTILSIFVVEAGFLGLFGGIVGTMLGILIAKAI 342