Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 835 a.a., ABC transporter, permease, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  366 bits (939), Expect = e-105
 Identities = 241/808 (29%), Positives = 423/808 (52%), Gaps = 42/808 (5%)

Query: 14  LRWSL--SEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVFVSG 71
           L W L   E++ GQL  + +A+TL + S+  L  +++R++  I  Q    + AD +  S 
Sbjct: 5   LAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSP 64

Query: 72  NPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLRG--EMRLSDGQ 129
             +  ++L    +   +     +F +M ++    QLVTV+AV+S YPL+G  E++  +GQ
Sbjct: 65  VQIDSTILAKADELGLKHVTNMQFNSMVYAGDQFQLVTVRAVESGYPLKGDIELKADNGQ 124

Query: 130 QTFNH--VASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQMPS 187
                    ++++W E R+   LG      + +G+++F +S E+   P   FNPF   P 
Sbjct: 125 DVKAQGLPQADEIWFESRLGGLLGSP--KTLELGNSEFSLSQEISRLPDAGFNPFASSPV 182

Query: 188 VYIHASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVS--LTASDRWRDQESG-SRT 244
           V +   DV KTG IQPGSRV +     GD++A+ + +  V   L  + RW D +SG S  
Sbjct: 183 VLMRIEDVAKTGVIQPGSRVTYLYQFAGDETALTAFENSVKPLLNNTQRWVDVQSGDSPI 242

Query: 245 NEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWLAL 304
               +R +++L L   + I +A   + +  Q Y       +AMLK+ GAS   +RR   +
Sbjct: 243 AGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSSQIRRLFGI 302

Query: 305 QVGLLLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYG---LRPLWIALASSFLIAVP 361
            + L+ +F + LG + G    +LL L +  LLP  + +Y     RP+ + +++  + A  
Sbjct: 303 HLLLVTLFGIGLGLIGG----ALLDLGINQLLPPEIAAYSPPLTRPILLGISTGLISAFM 358

Query: 362 ALGIPLGRLLSVSAVAVMQPVTA--QTRWQRNLLLIMVPIVPLLLVYWQNQLIWIVLIGI 419
               PL RLL++  + V+Q      Q     +LLL +  +  L  +Y Q+  + + ++  
Sbjct: 359 FSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWTLTLTVVAA 418

Query: 420 V----VLFAMLAVVSVLVTRLLAKLPLNPAMALALSRINRSGAASGLQFGALALSLMLLA 475
           V    VL ++L  V + +   +     NP + LAL+ + R    + +Q    + +L+LL 
Sbjct: 419 VLLLGVLLSLLGFVMIRLGHSVGMKTTNP-LQLALAGLRRRARQNAVQLVGFSAALVLLL 477

Query: 476 IIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDTASIERSAAYPIMRGRLT 535
            I  +R DLL++WQ+ LPENAPN F +NI+  +       +    I  +  YP++RGRLT
Sbjct: 478 TILALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLT 537

Query: 536 HINGQE--AKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEW-QSQNGVSVEQEVA 592
            ING+   + + A+ GE+    + RELNLTW   LP  N +L+G++ Q+ + VSVE  VA
Sbjct: 538 QINGETLISNEQAEAGEKGRVGISRELNLTWRNALPANNELLEGQFNQAADEVSVESGVA 597

Query: 593 SDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLISFR 652
             LG+KLGD LT++I++Q ++ +V +IR V W  ++PNF+ IF+ + +     + + SF 
Sbjct: 598 ERLGVKLGDKLTYVIDNQELTVKVASIRAVHWETLQPNFFMIFTQEALAPFAYTSMASFY 657

Query: 653 IQ-------------PEHDALLGQLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAA 699
           +              P++  +L +L +Q PTVS++D+  M  +++ ++ Q+  S+T++  
Sbjct: 658 LDEKGPNNTASGEGAPKNTVIL-ELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLV 716

Query: 700 LGVLAGVLLIFTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVS 759
           L +LA  L++       ++ RQ+E+ + RT GAS   +      E+ ++  + G++A + 
Sbjct: 717 LVLLASALVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGFEFALLGGIAGVLAVIV 776

Query: 760 ADAVVAAVMKWGFSLTPSLHMALWFVLP 787
           A+  +  +    F L   +H   W + P
Sbjct: 777 AEFALYLLKTQVFELNVYMHWPWWAIAP 804