Pairwise Alignments

Query, 815 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 833 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  376 bits (965), Expect = e-108
 Identities = 249/807 (30%), Positives = 428/807 (53%), Gaps = 42/807 (5%)

Query: 14  LRWSL--SEIRHGQLWPVTVALTLIIASIFALTALAQRMEQVIVKQGRDALTADTVFVSG 71
           L W L   E++ GQL  + +A+TL + S+  L  +++R++  I  Q    + AD +  S 
Sbjct: 5   LAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSP 64

Query: 72  NPLPESLLTLTAQQASQTSQMTRFATMAFSDQGMQLVTVKAVDSAYPLRGEMRL--SDGQ 129
             +  S+L    +   +     +F +M ++    QLVTV+AV+S YPL+G+++L  ++GQ
Sbjct: 65  VQIDASILAKADELGLKHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIKLKAANGQ 124

Query: 130 ----QTFNHVASNQLWLEPRVKDQLGVDIGDNVTIGDADFVVSGEVLEEPGLSFNPFQQM 185
               Q   H  ++++W E R+   LG      + +G+++F +S E+   P   FNPF   
Sbjct: 125 DEKAQGLPH--ADEVWFESRLGGLLGYP--QTLELGNSEFRLSQEISRLPDAGFNPFASS 180

Query: 186 PSVYIHASDVDKTGAIQPGSRVQFSLFMTGDDSAIESIKQQVS--LTASDRWRDQESG-S 242
           P V +   DV KTG IQPGSRV +     G++SA+ + +  V   L  S RW D +SG S
Sbjct: 181 PVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESALSAFENSVKPLLNNSQRWVDVQSGDS 240

Query: 243 RTNEVFERTQQYLSLTVAIVILMAATTLVLTCQHYVSTRTHTIAMLKSLGASRRWLRRWL 302
                 +R +++L L   + I +A   + +  Q Y       +AMLK+ GAS   +RR  
Sbjct: 241 PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLF 300

Query: 303 ALQVGLLLVFAVVLGSVIGVGLESLLRLPLKDLLPDPLPSYG---LRPLWIALASSFLIA 359
            + + L+ +F +VLG + G    +LL L +  LLP  + +Y     RPL + +++  + A
Sbjct: 301 GIHLLLVTLFGIVLGLIGG----ALLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISA 356

Query: 360 VPALGIPLGRLLSVSAVAVMQPVTA--QTRWQRNLLLIMVPIVPLLLVYWQNQLIWIVLI 417
                 PL RLL++  + V+Q      Q     +LLL +  +  L  +Y Q+  + + ++
Sbjct: 357 FMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWALTLTVV 416

Query: 418 GIVVLFA-MLAVVSVLVTRL---LAKLPLNPAMALALSRINRSGAASGLQFGALALSLML 473
             V+L   +L+++  ++ RL   +     NP + LAL+ + R    + +Q    + +L+L
Sbjct: 417 AAVLLLGVLLSILGFVMIRLGHSVGMKTTNP-LQLALAGLRRRARQNAVQLVGFSAALVL 475

Query: 474 LAIIWLVRTDLLSDWQRTLPENAPNAFALNISESEKASYLAALDTASIERSAAYPIMRGR 533
           L  I  +R DLL++WQ+ LPENAPN F +NI+  +       +    I  +  YP++RGR
Sbjct: 476 LLTILALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGR 535

Query: 534 LTHINGQE--AKQYAQNGEESSDALRRELNLTWAEQLPDYNPILQGEW-QSQNGVSVEQE 590
           LT ING+   + + A+ GE+    + RELNLTW   LP  N +++G + Q+ + VSVE  
Sbjct: 536 LTQINGETLISDEQAEAGEKGRVGISRELNLTWRNTLPANNELVEGHFNQAADEVSVESG 595

Query: 591 VASDLGLKLGDTLTFMINSQTVSAQVNTIRQVEWREMKPNFYFIFSPDVVQNLPVSYLIS 650
           VA  LGLKLGDTLT+MI++Q +  +V +IR V W  M+PNF+ IF+ + +     + + S
Sbjct: 596 VAERLGLKLGDTLTYMIDNQELKVKVASIRAVHWETMQPNFFMIFTQEALAPFAYTSMAS 655

Query: 651 FRIQPEHDALLG----------QLSRQHPTVSLMDIRTMGAKIQALLTQIVWSVTVLAAL 700
           F +  +   + G          +L +Q PTVS++D+  M  +++ ++ Q+  S+T++  L
Sbjct: 656 FYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVL 715

Query: 701 GVLAGVLLIFTLLRLSLSQRQQEIRLYRTLGASRRRVMHTIWAEYGVMALVGGLVASVSA 760
            +LA  L++       ++ RQ+E+ + RT GAS   +      E+ ++  + G++A + A
Sbjct: 716 VLLASSLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVA 775

Query: 761 DAVVAAVMKWGFSLTPSLHMALWFVLP 787
           +  +  +    F L   +H   W + P
Sbjct: 776 EFALYLLKTQVFELNVYMHWPWWGIAP 802