Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 539 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  192 bits (489), Expect = 2e-53
 Identities = 119/319 (37%), Positives = 185/319 (57%), Gaps = 2/319 (0%)

Query: 155 TTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFAH 214
           T   +AE +  SR      +DE G +G A ++ +      + AV   +  L D +   +H
Sbjct: 221 TMNAMAEDEDLSRSVAIGAKDEIGAMGDAFNRMIGKFRHSLEAVAGVTHQLTDVSERVSH 280

Query: 215 EVKESEVQIQNQYSSLDSVATAMEEMTASAAEVS-TTSQRATEQTEQDTKQVERSQQRVR 273
             +++   +  Q S  D VA+AM EM+A+  EV+   +Q AT     DT+  +   +   
Sbjct: 281 VAEKTLAAVNEQRSETDMVASAMNEMSATVQEVARNANQTATASAGADTES-KAGVKVAT 339

Query: 274 KAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGE 333
           +A+  IE L   I +A+  ++ + +++  I+ V+  IN I+EQTNLLALNAAIEAARAGE
Sbjct: 340 EALDGIEVLIAEIEKAAQVIQRVESDSASIDMVLGVINGIAEQTNLLALNAAIEAARAGE 399

Query: 334 QGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSE 393
           QGRGFAVVADEVRTLASRTQ +T EIQAMIE+LQ   +N  +  ++   +A + SQ V +
Sbjct: 400 QGRGFAVVADEVRTLASRTQKSTEEIQAMIEQLQSGVRNAVQAMKEAQLRARSGSQCVEK 459

Query: 394 VGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQG 453
               +  IA     IN+++ QI+T+A +QS+VA +I+  +S I   ++T    A QTS+ 
Sbjct: 460 AAQSLGLIATEVGTINEMNTQIATAAEQQSAVAEEINRNISTISRIADTTSTDATQTSEI 519

Query: 454 VSEITQATRNLGEILARYR 472
             E+ +    L  ++ +++
Sbjct: 520 SDELVRLATELNRLVGQFK 538



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 7/170 (4%)

Query: 302 QINAVITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSATVEIQA 361
           +INA+  T+NA++E  +L    A       G  G  F  +  + R         T ++  
Sbjct: 214 RINAMRHTMNAMAEDEDLSRSVAIGAKDEIGAMGDAFNRMIGKFRHSLEAVAGVTHQLTD 273

Query: 362 MIEKL-QVESQNIAKLTEQTVSQAHTSSQLVSEVGNDVQAIAHSAQLINDLSVQISTSAS 420
           + E++  V  + +A + EQ  S+    +  ++E+   VQ +A +A      S    T + 
Sbjct: 274 VSERVSHVAEKTLAAVNEQR-SETDMVASAMNEMSATVQEVARNANQTATASAGADTESK 332

Query: 421 EQSSVAHD----ISSELSDIRSQSNTLRRVAEQTSQGVSEITQATRNLGE 466
               VA +    I   +++I   +  ++RV E  S  +  +      + E
Sbjct: 333 AGVKVATEALDGIEVLIAEIEKAAQVIQRV-ESDSASIDMVLGVINGIAE 381