Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  180 bits (457), Expect = 1e-49
 Identities = 105/321 (32%), Positives = 180/321 (56%), Gaps = 1/321 (0%)

Query: 152 LYTTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMT 211
           L   T+++ EGDL++R+     +DE   I   L+   D  A  I  + + S  L D A  
Sbjct: 354 LLGVTRRLGEGDLSARVAV-VSKDEVADIANGLNLMADAFASSISHMDRTSYELTDVASR 412

Query: 212 FAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQR 271
               +  ++  +  Q +  + VATA+ EMTAS A+V+  ++ A    ++         + 
Sbjct: 413 LGASIGLAKQSMNAQQAETEQVATAINEMTASVADVAQNTEGAALAADEANTASRNGLRI 472

Query: 272 VRKAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARA 331
           + +A   I+ L+  +  ++  V+ L  ++  I  VI  I+ I++QTNLLALNAAIEAARA
Sbjct: 473 MHQAHSTIQALAEEVELSAQKVQALALHSQSIGGVIQVISTIADQTNLLALNAAIEAARA 532

Query: 332 GEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLV 391
           GEQGRGFAVVADEVRTLASRTQ++T EI+ +I++LQ  +    +  +    +AH      
Sbjct: 533 GEQGRGFAVVADEVRTLASRTQASTEEIRGIIQQLQSATDAAVQQMQAGQQKAHACISAA 592

Query: 392 SEVGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTS 451
           S+    + +I+   + I +++ QI+++A +Q +V+ DI+  + +IR+ S TL    +  +
Sbjct: 593 SDASGSLSSISQGVERIVEMNTQIASAAVQQHAVSEDINRNVMEIRNSSGTLMLGIDNNA 652

Query: 452 QGVSEITQATRNLGEILARYR 472
               E+ +   ++  ++AR++
Sbjct: 653 VTADELARVASDMRNVVARFK 673



 Score = 31.6 bits (70), Expect = 9e-05
 Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 42/196 (21%)

Query: 283 SRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVA 342
           SR  A    + +++N    +   V T IN ++     +A N             G A+ A
Sbjct: 411 SRLGASIGLAKQSMNAQQAETEQVATAINEMTASVADVAQNT-----------EGAALAA 459

Query: 343 DEVRTLASRT-----QSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSEVGND 397
           DE  T ASR        A   IQA+ E++++ +Q                          
Sbjct: 460 DEANT-ASRNGLRIMHQAHSTIQALAEEVELSAQK------------------------- 493

Query: 398 VQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQGVSEI 457
           VQA+A  +Q I  +   IST A + + +A + + E +    Q      VA++     S  
Sbjct: 494 VQALALHSQSIGGVIQVISTIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRT 553

Query: 458 TQATRNLGEILARYRT 473
             +T  +  I+ + ++
Sbjct: 554 QASTEEIRGIIQQLQS 569