Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  189 bits (480), Expect = 3e-52
 Identities = 132/444 (29%), Positives = 221/444 (49%), Gaps = 20/444 (4%)

Query: 48  IEQQSQLAVEYKLQGLLNHPDPSQLSVLKVQNRV----SDTIYSQGVVTASATSANGQAY 103
           I +  +  ++  L   LN      L +L+ ++ +    S  I S  + +   T     A 
Sbjct: 230 ISRHGEGIIDADLVSTLNDDSTKVLKMLEGKDTLVTLKSRQIDSTQLTSEKLTLVEKNAL 289

Query: 104 AYTESMKQYEQPAR---------------EQALRSFLLTYLWAIPFAIFTYWVATFIGGA 148
             TE MK+  +                    +LR+ +L  +  +   + ++ V   +  +
Sbjct: 290 TVTEQMKRLAKDIETVTNDISNQALNDINSASLRTLILVVIAIVVAVVISFAVVRPLKRS 349

Query: 149 LWVLYTTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDT 208
           L  +      +A GDLT +L    G DEF  +    ++ +D+L  LI ++   S  L   
Sbjct: 350 LDEVNGALNVLASGDLTHKLD-DTGHDEFAELSRNCNRLVDSLRSLIASILDRSNQLAAA 408

Query: 209 AMTFAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERS 268
           A   +    ++ + IQ Q S +D VATA  E+++SA +V+ ++  A  Q +Q  ++ +  
Sbjct: 409 AEETSAITSQTTIGIQEQKSQVDQVATATTELSSSAHQVNMSADDALSQIKQADEETQHM 468

Query: 269 QQRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEA 328
           +    +  + I  L+  +A+AS  +  +++++  I +++  I  I+EQTNLLALNAAIEA
Sbjct: 469 RTIADENKRTILSLADEVAKASKVINKVHSDSASIGSILDVIRGIAEQTNLLALNAAIEA 528

Query: 329 ARAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSS 388
           ARAGEQGRGFAVVADEVR+LASRTQ +T EIQ MIE LQ  +Q    + +   +QA +  
Sbjct: 529 ARAGEQGRGFAVVADEVRSLASRTQDSTREIQQMIEVLQQGTQQAVAVMQLGQNQAQSCV 588

Query: 389 QLVSEVGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAE 448
           +   +    +Q I+HS     D    I+ +A EQ+ V+  +S +L  I + S      AE
Sbjct: 589 EKTEQANQALQTISHSVHKAYDAGTHIAQAAQEQNLVSQQVSEKLEHIAAISEETALGAE 648

Query: 449 QTSQGVSEITQATRNLGEILARYR 472
           QT++   E+ +    L   +  +R
Sbjct: 649 QTAKSSHEVARLAEELQSSVKEFR 672