Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  287 bits (735), Expect = 5e-82
 Identities = 179/500 (35%), Positives = 287/500 (57%), Gaps = 33/500 (6%)

Query: 1   MREVQFRTIDRVFIRMSINDK---MWVIFLLFLSAITTIAGMRYWHTLA----------- 46
           M+EV+FR ID+  I M++  K   + ++ +L + ++  +  +++  TL            
Sbjct: 1   MKEVKFRWIDQYLIHMTLKTKFAILAIVPVLMVLSLALVLNIKFNETLLETHLTQSQKHT 60

Query: 47  -SIEQQSQLAVEY---KLQGLLNHPDPSQLSVLKVQNRVSDTIYSQGVVTASATSANGQA 102
             + Q    A+ Y   + QG           V+ V N + +           +  AN  A
Sbjct: 61  NEVNQLVSQALNYIPAEQQGAFLQSLSGNTQVVPV-NNLGNKAQQLARSGGGSDQANANA 119

Query: 103 YAYTESMKQYEQ-------PAREQALRS-----FLLTYLWAIPFA--IFTYWVATFIGGA 148
              T S    +Q        A+  AL S     F++  +  + F   IF+Y+++TF+GGA
Sbjct: 120 RYQTVSAISDKQLVAVNMLDAKAVALESGNDTWFVMGAIALVLFIIFIFSYYISTFVGGA 179

Query: 149 LWVLYTTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDT 208
           L+      ++ A+GDLT RL F   +DEF  +  ++D  ++    L+ ++   +  +R  
Sbjct: 180 LYTTVMALKRAADGDLTGRLNFFQVKDEFSILAISIDSLVERQHNLVKSINDATRQIRTV 239

Query: 209 AMTFAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERS 268
             +F    ++ +    +Q + LDS+ATAME+MTA+  EV++ ++ ++++T++  +QV   
Sbjct: 240 VESFRTNARDGQALAASQRAHLDSLATAMEQMTAAVREVASNAEHSSQETQEANQQVAAG 299

Query: 269 QQRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEA 328
            + +   +  I QLS  IA+AS +V  LN NA++I+ V+TTINAISEQTNLLALNAAIEA
Sbjct: 300 SKDIATTVSAIGQLSNEIARASDAVTVLNENASRIDEVVTTINAISEQTNLLALNAAIEA 359

Query: 329 ARAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSS 388
           ARAGEQGRGFAVVADEVRTLA RTQ+ATVEI++MIE LQ  S+N+ ++  +TV QA    
Sbjct: 360 ARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQSGSRNLTQVMARTVEQAEEGK 419

Query: 389 QLVSEVGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAE 448
           + V + G D+ +IAH +  + ++SV I+TSA EQS+VA++I+  L +IR+QS+ + + A 
Sbjct: 420 KHVIKTGEDLDSIAHHSAKVFEMSVLIATSAEEQSAVANEIAGNLMEIRNQSHDVEQSAN 479

Query: 449 QTSQGVSEITQATRNLGEIL 468
           Q+  G  E+      L ++L
Sbjct: 480 QSVSGCDELHATAEKLDKLL 499



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 39/207 (18%), Positives = 84/207 (40%), Gaps = 22/207 (10%)

Query: 270 QRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAA 329
           +R    ++ I   +R   Q  + VE+  TNA    A+     A S++ +L +L  A+E  
Sbjct: 220 ERQHNLVKSINDATR---QIRTVVESFRTNARDGQAL-----AASQRAHLDSLATAMEQM 271

Query: 330 RAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQ------TVSQ 383
            A  +      VA      +  TQ A  ++ A  + +      I +L+ +       V+ 
Sbjct: 272 TAAVRE-----VASNAEHSSQETQEANQQVAAGSKDIATTVSAIGQLSNEIARASDAVTV 326

Query: 384 AHTSSQLVSEVGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTL 443
            + ++  + EV   + AI+    L   L++  +  A+         +    ++R+ +   
Sbjct: 327 LNENASRIDEVVTTINAISEQTNL---LALNAAIEAARAGEQGRGFAVVADEVRTLAGRT 383

Query: 444 RRVAEQTSQGVSEITQATRNLGEILAR 470
           +    +    +  +   +RNL +++AR
Sbjct: 384 QAATVEIKSMIEALQSGSRNLTQVMAR 410