Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  542 bits (1397), Expect = e-159
 Identities = 291/478 (60%), Positives = 366/478 (76%), Gaps = 5/478 (1%)

Query: 1   MREVQFRTIDRVFIRMSINDKMWVIFLLFLSAITTIAGMRYWHTLASIEQQSQLAVEYKL 60
           MREV FRTID++FI+MSINDK WVI  LF  AIT I   RY  ++ +IEQ S  A+E +L
Sbjct: 1   MREVNFRTIDKLFIKMSINDKFWVIGALFFIAITCIGVSRYQGSIDAIEQASMTALESEL 60

Query: 61  QGLLNHPDPS----QLSVLKVQ-NRVSDTIYSQGVVTASATSANGQAYAYTESMKQYEQP 115
            G++   + S    + + L +Q +  + +  SQ  VTA   SA GQ  + T+++   E+ 
Sbjct: 61  SGMVRALETSGQTDKFTSLNIQPSGQASSSRSQDSVTAVVRSAAGQNLSLTQNVASRERD 120

Query: 116 AREQALRSFLLTYLWAIPFAIFTYWVATFIGGALWVLYTTTQKIAEGDLTSRLGFHPGRD 175
           A++ AL S LLTYLW +PFA+  YW ATFIGGALWVL+TTT+ IA+GDLTSRLGFHPGRD
Sbjct: 121 AKQSALYSLLLTYLWLLPFAVLLYWNATFIGGALWVLWTTTKNIAKGDLTSRLGFHPGRD 180

Query: 176 EFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFAHEVKESEVQIQNQYSSLDSVAT 235
           EFGTIGCALD AMDTL EL+V VK N+ TL  TA +FA E +ESE QI+ QY SLDSVAT
Sbjct: 181 EFGTIGCALDNAMDTLTELVVTVKDNAETLHHTASSFASENQESERQIEQQYQSLDSVAT 240

Query: 236 AMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQLSRYIAQASSSVET 295
           AMEEMTASA EVS  S  + E+ EQ+++ + +S +RV+KAI+DIEQLS +I Q S SV T
Sbjct: 241 AMEEMTASAGEVSNISNSSVEKVEQNSQSIRQSYERVQKAIKDIEQLSGFIEQTSDSVST 300

Query: 296 LNTNATQINAVITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSA 355
           L  NAT+IN VITTINAISEQTNLLALNAAIEAARAGE GRGFAVVADEVRTLASRTQSA
Sbjct: 301 LKVNATKINEVITTINAISEQTNLLALNAAIEAARAGEMGRGFAVVADEVRTLASRTQSA 360

Query: 356 TVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSEVGNDVQAIAHSAQLINDLSVQI 415
           TVEIQAMIE LQ E+ NI  +T++TV QA +S  L++E+G DV AI  S+Q + D+S QI
Sbjct: 361 TVEIQAMIENLQQETNNIDNITQRTVKQAESSQSLITEIGTDVSAINESSQSVIDMSFQI 420

Query: 416 STSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQGVSEITQATRNLGEILARYRT 473
           + S+ EQS+VA+DI+SELS+IR Q+N ++ +A Q+S GVS+++QA+ +LG+ILARY+T
Sbjct: 421 AASSEEQSAVANDIASELSEIRQQANVIKELANQSSIGVSQLSQASESLGKILARYQT 478