Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (825), Expect = 2e-92
 Identities = 193/488 (39%), Positives = 291/488 (59%), Gaps = 24/488 (4%)

Query: 1   MREVQFRTIDRVFIRMSINDKMWVIFLLFLSAITTIAGMRY------------WHTLASI 48
           M+ +QFR ID + I++S+N K WV+  +  +   TIA +                  AS+
Sbjct: 1   MKAIQFRKIDALLIKLSLNGKFWVVCSMVTAITLTIALLNLNAANNQLHAGSAARVQASV 60

Query: 49  EQQSQLAVEYKLQG----LLNHPDPSQLSVLKVQNRVSDTIYSQGVVTASATSANGQAYA 104
           +  +++A +  L G         +  +L+    Q+R  D+      VTASA  A GQ   
Sbjct: 61  DAYAKVASQMGLSGEALARFAQDNSLRLASRDEQSRRGDS------VTASAPVA-GQYLQ 113

Query: 105 YTESMKQYEQPAREQALRSFLLTYLWAIPFAIFTYWVATFIGGALWVLYTTTQKIAEGDL 164
            ++ +  +E   +  A     +  +   P    +YW++T +GG LW +Y   +++A+GDL
Sbjct: 114 LSQDVAAWEAEGKSDAWWMLWVALIALYPLYQLSYWISTSLGGGLWDMYIAIKRLADGDL 173

Query: 165 TSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFAHEVKESEVQIQ 224
           + RL F  G+D+F  I   +D+  D ++E++ A+  N+ TL + +  F  + K+++   Q
Sbjct: 174 SFRLNFF-GKDDFSLIAREIDRNADNMSEMVKAIGNNARTLANASDEFNLQAKQNDELAQ 232

Query: 225 NQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQLSR 284
            Q+  LD+VA AM++MTA+  EVS  +   ++ T+ +      S+QR+ +A++ I QL+ 
Sbjct: 233 FQHQFLDTVAVAMDQMTAAIEEVSHNAANTSDHTKHNATAAADSKQRIAEAVRRIGQLTG 292

Query: 285 YIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADE 344
            I  ASS+V+ L+ NAT+I AV+TTIN ISEQTNLLALNAAIEAARAGEQGRGFAVVADE
Sbjct: 293 QIDAASSAVDQLSGNATEIGAVVTTINGISEQTNLLALNAAIEAARAGEQGRGFAVVADE 352

Query: 345 VRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSEVGNDVQAIAHS 404
           VRTLA RTQ ATVEIQ+MIE LQ  S  +A +T + V QA      +  VG+DV  +A S
Sbjct: 353 VRTLAGRTQQATVEIQSMIEGLQSGSGQLADITHEIVEQAELGRAAIESVGSDVDTMADS 412

Query: 405 AQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQGVSEITQATRNL 464
              + D+S QI+ SA EQS  A DI+S+L++IR QS T++  AE++    SE+ Q++  L
Sbjct: 413 IDQVFDMSSQIAASAEEQSVSARDIASQLNEIRDQSQTIKETAERSVVLASELQQSSTEL 472

Query: 465 GEILARYR 472
             IL++YR
Sbjct: 473 DGILSQYR 480