Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  304 bits (778), Expect = 5e-87
 Identities = 187/495 (37%), Positives = 292/495 (58%), Gaps = 27/495 (5%)

Query: 1   MREVQFRTIDRVFIRMSINDKMWVIFLLFLSAITTIAGMRYWHTLASIEQ---QSQLAVE 57
           MREV+FR ID+  I M++  K  ++ ++ +  +  ++ + Y    + I+Q   QS LA  
Sbjct: 1   MREVKFRWIDQYLIHMTLKTKFTILAIIPIITLMGLSYILYGQFNSQIKQSHQQSALADA 60

Query: 58  YKLQGLLNH-----PDPSQLSVLK--VQNRVSDTIYSQGVVTASATSANGQAYAYTESMK 110
            K+  L++      PD    S  +  V    +DT  S    T+    A G      +S+ 
Sbjct: 61  QKMVELIDLSLKYVPDDKAASFKQELVSAGFADTQSSLNAKTSRLVHAGGGTLMQGDSLT 120

Query: 111 QYEQPAR------------EQAL---RSFLLTYLWAIPFAIF--TYWVATFIGGALWVLY 153
            + + +             +Q L   +S ++  L A+ F I   +Y+++TF+GGAL+   
Sbjct: 121 AHSRASSANLVAKTEVTDLDQVLSSAQSVVIISLVALIFVILLSSYYISTFVGGALYTNV 180

Query: 154 TTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFA 213
              ++ A+GDLT RL F   +DEF  +  ++D  ++   +L+  + Q S+ +R     F 
Sbjct: 181 MALKRAADGDLTGRLNFFEVKDEFSILAVSIDTLVERQHQLVSRMTQASSQIRTVVQAFR 240

Query: 214 HEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVR 273
              +E +     Q   LDS+ATAMEEMTA+  EV+  +++++ +T++  +QVE   + + 
Sbjct: 241 QTAQEGQTLAAEQRQHLDSLATAMEEMTAAVKEVARNAEQSSNETQEANQQVEAGSKDIA 300

Query: 274 KAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGE 333
             +Q I  L+  I  AS++V TLN NA +I+ V+TTINAISEQTNLLALNAAIEAARAGE
Sbjct: 301 ITVQAIGDLANEIGDASTAVNTLNDNAAKIDEVVTTINAISEQTNLLALNAAIEAARAGE 360

Query: 334 QGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSE 393
           QGRGFAVVADEVRTLA RTQ+ATVEI++MIE LQ  S  + ++ ++TV +A    Q V E
Sbjct: 361 QGRGFAVVADEVRTLAGRTQAATVEIKSMIEALQTGSHALTQVMKRTVEKAQDGKQHVLE 420

Query: 394 VGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQG 453
            G D++AIAH ++ + ++SV I+TSA EQS+VA++I++ L +IR+QS+ + + A Q+  G
Sbjct: 421 TGEDLKAIAHHSERVYEMSVLIATSAEEQSAVANEIATNLMEIRNQSHDVEQSANQSVSG 480

Query: 454 VSEITQATRNLGEIL 468
             E+      L ++L
Sbjct: 481 CDELHATAEQLDQLL 495