Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  197 bits (502), Expect = 7e-55
 Identities = 134/406 (33%), Positives = 214/406 (52%), Gaps = 23/406 (5%)

Query: 88  QGVVTASATSANGQAYA-YTESMKQY------------EQPAREQALRS--FLLTYLWAI 132
           QG         +G++YA Y   M+ Y            ++   EQA+    F L  +  I
Sbjct: 230 QGTEVIRTIDLDGKSYALYRHGMQDYSGKTFGVLDIALDRSHSEQAMSDIRFKLIMIGFI 289

Query: 133 PFAIFTYWVATFIGGALW-VLYTTTQKI-----AEGDLTSRLGFHPGRDEFGTIGCALDK 186
            F I T  +A FI  ++   +  TT  +      EGDLT R+     +DE   +  A ++
Sbjct: 290 AFLIGTA-IAWFIAKSITRPIAETTNALNDIAEGEGDLTRRIEVK-SKDEIAQLALAFNR 347

Query: 187 AMDTLAELIVAVKQNSATLRDTAMTFAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAE 246
             + +   +  V  +++ L  +A   +    E++   + Q+   + VATAM EM A+  E
Sbjct: 348 FAEKIHATVAQVSDSTSLLATSAEEMSAITNETQQMAKRQHLETEQVATAMNEMAATVQE 407

Query: 247 VSTTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINAV 306
           V+  +  A +     ++  E  +  V K I  I  L+  IA A+ ++  L  N  QI++V
Sbjct: 408 VAHNATDAADAATHASESTEHGKLLVEKVISTISLLADEIAHAAKAINELERNTAQIDSV 467

Query: 307 ITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKL 366
           +  I  I++QTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQ++T EIQ MIE L
Sbjct: 468 LVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTSEIQQMIEAL 527

Query: 367 QVESQNIAKLTEQTVSQAHTSSQLVSEVGNDVQAIAHSAQLINDLSVQISTSASEQSSVA 426
           Q  +++       + +       LV E G  ++AI  +   I+ +++QI+++A+EQ +V+
Sbjct: 528 QHSAKSTVSTMNTSTATTQNCVSLVHEAGEALEAITQAVSTISQMNIQIASAANEQCAVS 587

Query: 427 HDISSELSDIRSQSNTLRRVAEQTSQGVSEITQATRNLGEILARYR 472
            +I+  +++I   +      A QT++   E+ Q +  L  +LA++R
Sbjct: 588 AEINKNVNNINDITINATESAVQTARAGDELAQLSMRLTTLLAQFR 633