Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  290 bits (741), Expect = 1e-82
 Identities = 177/501 (35%), Positives = 285/501 (56%), Gaps = 34/501 (6%)

Query: 1   MREVQFRTIDRVFIRMSINDKMWVIFLLFLSAITTIA---GMRYWHTLASIEQQSQLAVE 57
           M+EV+FR ID+  I M++  K  ++ L+ +  I  +A     ++ H L         +  
Sbjct: 1   MKEVKFRWIDQYLIHMTLKTKFSILALVPMFMIVGLAVFLNNQFQHNLLESHLNGLQSTS 60

Query: 58  YKLQGLLN----------HPDPSQLSVLKVQNRVSDTIYSQGVVTASATSANGQAYAYTE 107
            K+  +             P+ S L    +QN +S    SQ   +A   + NG       
Sbjct: 61  QKINQVATTLYSKLPEQERPNISSLVSQGLQN-ISIVSISQADSSAQTIARNGGGIDTNS 119

Query: 108 SMKQYEQPAREQALRSF----------------LLTY----LWAIPFAIFTYWVATFIGG 147
           + ++      EQ L +                 LL Y    +      +F+Y+++TF+GG
Sbjct: 120 TPERVISALSEQNLLTIITVDNREINTLLADDNLLIYSVMAVLLFVLFLFSYYISTFVGG 179

Query: 148 ALWVLYTTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRD 207
           AL+      ++ A GDLT RL F   +DEF  +  ++D  ++    L+  + +++  +R+
Sbjct: 180 ALYTTVMALKRAASGDLTGRLNFFEVKDEFSLLAISIDTLVERQHNLVKQIAESTFKIRE 239

Query: 208 TAMTFAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVER 267
              +F +  ++ +    NQ   LDS+ATAMEEMTA+  EV+  ++++  +T++  +QV  
Sbjct: 240 VVSSFRNTAQQGQALAVNQRQHLDSLATAMEEMTAAVKEVARNAEQSCAETQEANQQVNA 299

Query: 268 SQQRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIE 327
             + +   +  I+ LS  I+ AS++V TLN  A++I+ V++TINAIS+QTNLLALNAAIE
Sbjct: 300 GSKDIETTVSAIDVLSDEISAASNAVNTLNDKASKIDEVVSTINAISQQTNLLALNAAIE 359

Query: 328 AARAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTS 387
           AARAGEQGRGFAVVADEVRTLA RTQ+ATVEI++MIE LQ  ++N+ ++  +TVSQA   
Sbjct: 360 AARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIESLQQGTRNLTQVMSRTVSQASEG 419

Query: 388 SQLVSEVGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVA 447
            Q V + G D+Q+IAH +  + ++SV I+TSA EQS+VA++I++ L +IR+QS+ + + A
Sbjct: 420 KQHVLKTGKDLQSIAHHSSRVFEMSVLIATSAEEQSAVANEIATNLMEIRNQSHDVEQSA 479

Query: 448 EQTSQGVSEITQATRNLGEIL 468
            Q+  G  E+      L +++
Sbjct: 480 NQSVSGCDELQATAGQLDQLM 500