Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  197 bits (500), Expect = 1e-54
 Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 13/373 (3%)

Query: 109 MKQYEQPAREQALRSFLLTYLWAIPFAIFTYWVATFIGGALWV----LYTTTQKIA--EG 162
           ++ Y Q   EQ     L+  L A+     T +V       + V    +      IA  EG
Sbjct: 185 VEDYRQTVTEQMAEKSLMILLIALVLTGATAFVIMVAAHRMVVPIKNMADNLNDIAKGEG 244

Query: 163 DLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFAHEVKESEVQ 222
           DLT RL    G DE   +G A +  +D L  +I  V   +A ++  A     + K    Q
Sbjct: 245 DLTKRLSVK-GEDEIAQLGRAFNLFVDKLQHIIGDVASATAKVKTAANAIHDQTKVMSSQ 303

Query: 223 IQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQL 282
           + +  +  D V TA+ EM+++A+EV+  + +  E T+  T  V  +Q+ V  ++++I  L
Sbjct: 304 LLSHNNETDQVVTAITEMSSTASEVAQNTTQVAEATQAATGDVANAQRCVDASLEEIAAL 363

Query: 283 SRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVA 342
              I  A+ S+++L+  + +IN+V++ I  I+EQTNLLALNAAIEAARAGEQGRGFAVVA
Sbjct: 364 MEQINHAAGSIKSLSEQSQKINSVLSVIGGIAEQTNLLALNAAIEAARAGEQGRGFAVVA 423

Query: 343 DEVRTLASRTQSATVEIQAMIEKL-QVESQNIAKLTE--QTVSQAHTSSQLVSEVGNDVQ 399
           DEVR+LASRTQ++T+EI  M+  L ++ SQ +  + E  Q+  ++  SS+ +SE    + 
Sbjct: 424 DEVRSLASRTQASTLEINEMLSALHKLVSQAVKTMDESQQSCVRSVESSRAISE---SLG 480

Query: 400 AIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQGVSEITQ 459
           ++  +   IND+S QI+T+A+EQSSV  +I+  +  I+   N L   +E  ++    ++Q
Sbjct: 481 SVTSAVTAINDMSTQIATAATEQSSVTEEINRNVYAIQEIVNELLHSSEHAARVSQTVSQ 540

Query: 460 ATRNLGEILARYR 472
              NLG ++ +++
Sbjct: 541 EGTNLGNLVGQFK 553