Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  289 bits (740), Expect = 1e-82
 Identities = 180/504 (35%), Positives = 291/504 (57%), Gaps = 40/504 (7%)

Query: 1   MREVQFRTIDRVFIRMSINDKMWVIFLLFLSAITTIA---GMRYWHTLAS-----IEQQS 52
           M+EV+FR ID+  I M++  K  ++ L+ +  I  +A     ++  TL       I+  S
Sbjct: 1   MKEVKFRWIDQYLIHMTLKTKFAILALVPMFMIVGLAVFLNTQFRDTLLESHLNGIQDSS 60

Query: 53  QLAVEYKLQGLLNHPDPSQLSVLKVQNRVSDTIYSQGVVTASATSANGQAYAY------T 106
           Q   +   Q     P+  Q ++    N +S  + +  +VT S   +  Q  A       T
Sbjct: 61  QKINQLAAQIYNKLPEQEQQNL---PNLLSQGMQNVRIVTVSEADSRAQTLARSGGGIDT 117

Query: 107 ESMKQYEQ------------PAREQALRSFL----------LTYLWAIPFAIFTYWVATF 144
            S  Q               P  ++A+ + L          +  L  + F +F+Y+++TF
Sbjct: 118 SSSPQRAISSVNAQNLVTIIPVDDRAIDALLADDNILVYGVMAVLLFVLF-LFSYYISTF 176

Query: 145 IGGALWVLYTTTQKIAEGDLTSRLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSAT 204
           +GGAL+      ++ A GDLT RL F   +DEF  +  ++D  ++    L+  + ++++ 
Sbjct: 177 VGGALYTTVMALKRAASGDLTGRLNFFEVKDEFSILAISIDTLVERQHTLVKQIAESTSK 236

Query: 205 LRDTAMTFAHEVKESEVQIQNQYSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQ 264
           +R+   +F    ++ +    NQ   LDS+ATAMEEMTA+  EV+  +++++ +T++  +Q
Sbjct: 237 IREVVSSFRSTAQQGQALAVNQRQHLDSLATAMEEMTAAVKEVARNAEQSSAETQEANQQ 296

Query: 265 VERSQQRVRKAIQDIEQLSRYIAQASSSVETLNTNATQINAVITTINAISEQTNLLALNA 324
           V    + +   +  I+ LS  I+ AS +V  LN NA++I+ V++TINAIS+QTNLLALNA
Sbjct: 297 VNAGSKDIETTVSAIDVLSDEISAASDAVNILNENASKIDEVVSTINAISQQTNLLALNA 356

Query: 325 AIEAARAGEQGRGFAVVADEVRTLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQA 384
           AIEAARAGEQGRGFAVVADEVRTLA RTQ+ATVEI++MIE LQ  S+N+ ++  +TVSQA
Sbjct: 357 AIEAARAGEQGRGFAVVADEVRTLAGRTQAATVEIKSMIESLQQGSRNLTQVMSRTVSQA 416

Query: 385 HTSSQLVSEVGNDVQAIAHSAQLINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLR 444
               Q V + G D+++IAH +  + ++SV I+TSA EQS+VA++I++ L +IR+QS+ + 
Sbjct: 417 SEGKQHVLQTGKDLESIAHHSSRVFEMSVLIATSAEEQSAVANEIATNLMEIRNQSHDVE 476

Query: 445 RVAEQTSQGVSEITQATRNLGEIL 468
           + A Q+  G  E+      L +++
Sbjct: 477 QSANQSVSGCDELQATAGQLDQLM 500