Pairwise Alignments

Query, 473 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  341 bits (875), Expect = 3e-98
 Identities = 199/487 (40%), Positives = 293/487 (60%), Gaps = 18/487 (3%)

Query: 1   MREVQFRTIDRVFIRMSINDKMWVIFLLFLSAITTIAGMRYWHTLASIEQQS-------- 52
           M+++QFRTID + I+ S+N K WV+  +       +A + Y H   ++E  S        
Sbjct: 1   MKQIQFRTIDAILIKFSLNGKFWVVCSMVALITAAVALVNYQHAHRNLEAASLARVQATV 60

Query: 53  ----QLAVEYKLQG--LLNHPDPSQLSVLKVQNRVSDTIYSQGVVTASATSANGQAYAYT 106
               Q+A   KLQG  L      + LSV+    R ++ +  +  VTASA+  +G A   +
Sbjct: 61  DAFAQVANAQKLQGDALSQFARDNGLSVV---TRQTEALRQRDNVTASASVGSGGALELS 117

Query: 107 ESMKQYEQPAREQALRSFLLTYLWAIPFAIFTYWVATFIGGALWVLYTTTQKIAEGDLTS 166
           +++ Q+E   R  A   F L  +  +P    +YW++T +GG LW +Y   +++A+GDL+ 
Sbjct: 118 QNVAQWESEGRSDANLMFWLALIGLLPLFQLSYWISTSLGGGLWDMYMAIKRLADGDLSF 177

Query: 167 RLGFHPGRDEFGTIGCALDKAMDTLAELIVAVKQNSATLRDTAMTFAHEVKESEVQIQNQ 226
           RL F  G D+F  I   +D+  D ++E++ A++ N+ TL   A  F  + K S   I  Q
Sbjct: 178 RLNFF-GTDDFSLIAREIDRCADNMSEMVSAIRSNAQTLSLAADEFNQQAKSSGELIGAQ 236

Query: 227 YSSLDSVATAMEEMTASAAEVSTTSQRATEQTEQDTKQVERSQQRVRKAIQDIEQLSRYI 286
           +  LDSVA AM +MT++  EVS  +   + QT+ +  Q+  SQ R+   +  I QLS  I
Sbjct: 237 HQFLDSVAVAMAQMTSAIEEVSVNASNTSLQTKDNASQMSASQGRISHTVDSIGQLSTKI 296

Query: 287 AQASSSVETLNTNATQINAVITTINAISEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 346
             A SSVE L+ +A  I+AV+TTIN+ISEQTNLLALNAAIEAARAGEQGRGFAVVADEVR
Sbjct: 297 GAAFSSVEQLSKDAAGIDAVVTTINSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVR 356

Query: 347 TLASRTQSATVEIQAMIEKLQVESQNIAKLTEQTVSQAHTSSQLVSEVGNDVQAIAHSAQ 406
           TLA RTQ ATVEIQAMIE LQ  ++ ++ +T + V +A      +  VG+DV+ +A S  
Sbjct: 357 TLAGRTQQATVEIQAMIEGLQSGTRQLSNITTEIVDRADEGRSAIIAVGDDVEGMAQSVN 416

Query: 407 LINDLSVQISTSASEQSSVAHDISSELSDIRSQSNTLRRVAEQTSQGVSEITQATRNLGE 466
            + D+S QI+ SA EQS  A DI+ +L++IR QS+T+++ A+++     ++  A+  L  
Sbjct: 417 AVFDMSSQIAASAEEQSVAARDIAGQLNEIRHQSDTIKQTAQRSVTLAHDLQHASVELEG 476

Query: 467 ILARYRT 473
           IL +YRT
Sbjct: 477 ILKQYRT 483