Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N2E2

 Score =  380 bits (975), Expect = e-110
 Identities = 209/415 (50%), Positives = 276/415 (66%), Gaps = 6/415 (1%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           +TF+ LGL   LL  L  LG   PTP+Q QA+P VL G+D++A AQTGTGKTA F +PL+
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
           Q    +  +  ANS  +RAL+LVPTRELA+QV +S++ YA+   L   AVYGG S+  Q+
Sbjct: 61  QLLTTEGPKVAANS--VRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQM 118

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
             LR GVD+L+ATPGRLLD     +L   +++ LVLDEADRMLD+GF  +L  + + L  
Sbjct: 119 MKLRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPK 178

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245
            RQTL FSATF   I+ +A +++ DP+ ++V+P N  A TV+Q V  VDKKRK EL  +L
Sbjct: 179 KRQTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHL 238

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           +    W+QVLVF KTR G DAL E+L+  G+ A  I+GDK Q  RQ+ALD FKAG+V+ L
Sbjct: 239 MRKHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKAGEVQIL 298

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATDVAARGLDI  L  VVN+D+P  AEDY+HRIGRTGRAG  G A+SL+  DE   L A
Sbjct: 299 VATDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSA 358

Query: 366 IERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRGKK 420
           IE L    LP++  + FEP   V + +    ++G+  +K K   + K     GK+
Sbjct: 359 IEMLTRQTLPRQMEQDFEPEHRVPDTD----ASGQVIKKPKKPKKPKTSGGGGKR 409