Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  363 bits (931), Expect = e-104
 Identities = 190/393 (48%), Positives = 266/393 (67%), Gaps = 3/393 (0%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++F+ LGL   L+  +   G   PTP+QQ+AIP VLQG+D++  AQTGTGKT  F LP++
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 66  QRFIEQPWQREANS---KEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMK 122
           +R        ++     ++ R LVL PTRELA QV +S + YA+  +     ++GG  M 
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 123 VQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
            Q+  +  GVD+L+A PGRLLD A   S+ L  VE+LVLDEADRMLDMGF+ D+++VL R
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 183 LSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELL 242
           L   RQ L FSATF   I  +A +++ +P  ++VTP N+T E ++Q V+ +    KR LL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
           ++LI +  W+QVLVFT+T+ G++ LAE L   G+ AV+I+G+KSQ AR KAL DFKAG+V
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300

Query: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
           R L+ATD+AARGLDI QL  VVN+++P   EDYVHRIGRTGRAG +G A+SL++ DE+  
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 363 LEAIERLLNTRLPQEWLKGFEPSPVVHEENSPR 395
           L++IER+   ++    L GF+ S +  E+   R
Sbjct: 361 LKSIERMTKQKIADGDLMGFDASTIEAEKPEVR 393