Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  369 bits (947), Expect = e-106
 Identities = 197/416 (47%), Positives = 274/416 (65%), Gaps = 11/416 (2%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++F+ LGL   L   +   G   PTP+QQ+AIP VLQG+D++  AQTGTGKT  F LP++
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 66  QRFI---EQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMK 122
           +          +     K+ R LVL PTRELA QV +S + YA+   LK   ++GG  M 
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120

Query: 123 VQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
            Q+  +  G+D+L+A PGRLLD A+ K++ L  VE+LVLDEADRMLDMGF+ D+++VL +
Sbjct: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 183 LSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELL 242
           L   RQ L FSATF   I  +A +++ +P  ++VTP N+T E ++Q ++ V    KR LL
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240

Query: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
           ++LI    W+QVLVFT+T+ G++ LAE L+  G+ A +I+G+KSQ AR KAL DFKA +V
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300

Query: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
           R L+ATD+AARGLDI QL  VVN+++P   EDYVHRIGRTGRAG +G A+SL++ DE+  
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 363 LEAIERLLNTRLPQEWLKGFEPS------PVVHEENSPR--RSAGRSSEKRKLKAQ 410
           L+ IER+   R+P+  L GF+ S      P V E   PR  R  G++  +R   A+
Sbjct: 361 LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQRGEGKARGERNKPAE 416