Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  313 bits (801), Expect = 9e-90
 Identities = 177/422 (41%), Positives = 265/422 (62%), Gaps = 11/422 (2%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           F Q  L  RLL  ++EL    PTP+Q  AIP  L+G+D+   AQTG+GKTAAF LP++ R
Sbjct: 2   FDQFALHERLLKAVAELKFVEPTPVQVAAIPPALEGRDLRVTAQTGSGKTAAFVLPMLNR 61

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
            I     R     ++RAL+L+PTRELAQQ L  ++ +++ T +K   + GG   KVQ   
Sbjct: 62  LIGDAVVRT----DVRALILLPTRELAQQTLKEVERFSQFTFIKSAMITGGEDFKVQAAV 117

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           LR   DILI TPGR+++H +  +L L  VE+L+LDEADRMLDMGF  D+QR++   +  +
Sbjct: 118 LRKVPDILIGTPGRMIEHLNAGTLILKDVEMLILDEADRMLDMGFAEDVQRLVGECAKRQ 177

Query: 188 QTLFFSATFD-SKIKAVAYRIMRDPIEVQVTPSNSTAE-TVQQMVYPVDKKRKRELLSYL 245
           QTL FSAT   S ++ +   ++RDP+ +Q+   +  +E T QQ++   D   K +L+ +L
Sbjct: 178 QTLLFSATSGGSALREMTASVLRDPLHLQLNRISELSEGTRQQIITAEDTAHKEKLVHWL 237

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           + ++ +++ ++FT TR  +D L   L  +G+KA  ++GDK Q  R+ A+D  K G V+ L
Sbjct: 238 LANETYKKAVIFTNTRVQADRLYGRLVAEGVKAFVLHGDKDQKDRKLAIDRVKEGGVKVL 297

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATDVAARGLDI  L+ V+N+DMP   ++YVHRIGRTGRAG  GLA+SL+ H++   + +
Sbjct: 298 VATDVAARGLDIEGLDLVINFDMPRSGDEYVHRIGRTGRAGAEGLAISLICHNDWNLMSS 357

Query: 366 IERLLNTRLPQEWLKGFEPSPVVHEE-NSPRRSAG----RSSEKRKLKAQLKIHAQRGKK 420
           IER L  R     +KG + S +  +   +  ++AG    +  +K+  K + K  A+R K 
Sbjct: 358 IERYLKQRFEHRVVKGLKGSYMGPKNLKASGKAAGPKKKKDDKKKDDKKKAKPTAKRPKN 417

Query: 421 AR 422
           A+
Sbjct: 418 AK 419