Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  356 bits (914), Expect = e-103
 Identities = 185/407 (45%), Positives = 263/407 (64%), Gaps = 1/407 (0%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++F+   L S L N L++LG   PT +Q  AIP +L G D++  A TGTGKTAAF LP++
Sbjct: 1   MSFAAFTLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPIL 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
            R +        N    RALVLVPTREL QQV D+ +A AKG+ ++I  VYGG  ++ QL
Sbjct: 61  ARLLADE-VASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQL 119

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
           N ++GGVD+++ATPGRLLDH   ++L +  V  LV DEADRMLDMGF  +++ ++++L+ 
Sbjct: 120 NAIKGGVDLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAK 179

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245
            RQT  FSAT    +  +A  +M  P  +++  +      +++ VY +D +RK E + +L
Sbjct: 180 TRQTALFSATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHL 239

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           +G  +W QVL+F++T++G+D L  +L   G  AV+++ D SQ  R++ L DFKA   R L
Sbjct: 240 LGKNSWSQVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADARVL 299

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATDVAARGLDI  L  ++N ++PFK EDYVHRIGRTGRAG AGLA+SLL   ++P L A
Sbjct: 300 VATDVAARGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDVADEPLLVA 359

Query: 366 IERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQLK 412
           +E  L+ RLPQ+W  GFEP   +  E     S     +K + +A  K
Sbjct: 360 LEHYLDRRLPQQWYPGFEPDLSIRHERPHSLSKAAQKQKARKRALAK 406