Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  326 bits (836), Expect = 8e-94
 Identities = 176/395 (44%), Positives = 255/395 (64%), Gaps = 7/395 (1%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           FS +GL  +LL  ++ELG  +PTPIQ +AIPH L G+DVL  AQTGTGKTAAFG+PLI +
Sbjct: 9   FSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQ 68

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
            ++  + R+  +K +R LVL PTRELA Q+  +L+   +GT +K   V GG S+  Q++ 
Sbjct: 69  MMQ--YGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISR 126

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           L  G DILIATPGRLLD     +L LG  + LVLDEAD+MLD+GF+  L+++   L   R
Sbjct: 127 LSRGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQR 186

Query: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIG 247
           QT+ FSAT   ++  +A   ++ P+ ++V P    A+ + Q V+ + K  K  LL  L+G
Sbjct: 187 QTMLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLG 246

Query: 248 SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIA 307
           +   ++ LVF +T+ G + L + L   G  A +I+G+KSQG R++AL  FK+G+V+ L+A
Sbjct: 247 AHKDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVA 306

Query: 308 TDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIE 367
           TDVAARGLDI  ++ V NY++P   + YVHRIGRT RAG  G AV+  + DE  +L+AI+
Sbjct: 307 TDVAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQ 366

Query: 368 RLLNTRLPQEWLKGFEPSPVVHEENSP--RRSAGR 400
           + +N  +P   +    P  V+ +  +P  RR  G+
Sbjct: 367 KTMNLNIP---VASGRPWEVLPDAKAPAGRRGGGK 398