Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  288 bits (738), Expect = 2e-82
 Identities = 166/378 (43%), Positives = 226/378 (59%), Gaps = 13/378 (3%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           FS L L+ ++L  + E G  +PTPIQ  AIP  L+G+DVL  AQTGTGKTA+F LP+I  
Sbjct: 4   FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
                 +  A ++  R+LVL PTRELA QV ++   Y K  +L    + GG S K Q   
Sbjct: 64  LA----RGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTL 119

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           +  GVD+LIATPGRLLDH     L L  V+V+V+DEADRMLDMGF+PD++R+       R
Sbjct: 120 IDKGVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTR 179

Query: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKR-------KRE 240
           QTLFFSAT   +I+ +    +  P  V+V    +T+E + Q V      R       KR+
Sbjct: 180 QTLFFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRK 239

Query: 241 LLSYLIGSKNWQ--QVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFK 298
           LL +LI  +  +    ++F   +   D +A+ LK  G  A  I+GD  Q  R K L+ F+
Sbjct: 240 LLRHLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFR 299

Query: 299 AGKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHD 358
            G +R L+A+DVAARGLD+  +  V N+D+P  AEDYVHRIGRTGRAG  G A+ +    
Sbjct: 300 EGSLRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPK 359

Query: 359 EQPQLEAIERLLNTRLPQ 376
           ++  LE IERL+   +P+
Sbjct: 360 DEKNLEDIERLVQNEIPR 377