Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  365 bits (938), Expect = e-105
 Identities = 197/401 (49%), Positives = 270/401 (67%), Gaps = 3/401 (0%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           FSQL L + L   L  L  +  T IQ +AIP VL G D++A AQTGTGKTAAF LP++ +
Sbjct: 3   FSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPILAK 62

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
            +    Q E + K+ RALVLVPTRELA QV   +  +A+ T L    VYGG S++ Q   
Sbjct: 63  LMGLA-QAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQQ 121

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           L  GVD+++ATPGRLLD     +  L  V  LV DEADRMLDMGF  ++  ++  L   R
Sbjct: 122 LAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSER 181

Query: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIG 247
           QTL FSAT D K+ A+++R ++ P  + V+P NS ++ V+Q VY VD +RK  LLS+LI 
Sbjct: 182 QTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLIN 241

Query: 248 SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIA 307
             +WQ+VLVF++ +  +D LA  L   GI A + +GD  QGAR++ L DF+ G+++ L+A
Sbjct: 242 KGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLVA 301

Query: 308 TDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIE 367
           TDVAARG+DI  L+ VVNY++P+ A+DYVHRIGRTGRAG  G+AV+L   ++   LE IE
Sbjct: 302 TDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEIE 361

Query: 368 RLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLK 408
            LL+ RLPQ+WL GFEP  +   + +PRR+ G++++KR+ K
Sbjct: 362 ALLDKRLPQQWLPGFEPD-LTKADPNPRRN-GKAAQKRRAK 400