Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  350 bits (898), Expect = e-101
 Identities = 194/420 (46%), Positives = 274/420 (65%), Gaps = 10/420 (2%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           + F  L LD  L       G    T +Q + IP  L G+D++A AQTGTGKTAAF   L+
Sbjct: 1   MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
           QR + QP        ++ AL+L PTRELA QV DS+  Y++ TEL  +AVYGG ++  Q 
Sbjct: 61  QRLLNQP----RAIGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQR 116

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
             L  GVDIL+ATPGRL D      L L  V+ L++DEADRMLDMGF+ D++R  R L  
Sbjct: 117 KALARGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCV 176

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245
              T+ FSATF  ++KA+A +++ +P  + VT S S+   ++Q +YP+D +RK ELL+ L
Sbjct: 177 SHSTMLFSATFTPEVKALATKMLDNPEWINVT-SASSGPQIEQKIYPLDARRKAELLAEL 235

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           IG  NWQQVLVF  T++ ++ L  ELKLDGIK    +GDK+QGAR +AL+ FKAG++R L
Sbjct: 236 IGRNNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVL 295

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATDVAARGLDI  L  V+N ++P + +DYVHRIGRTGRAGL+G+++S ++  ++  L A
Sbjct: 296 VATDVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGA 355

Query: 366 IERLLNTRLPQEWLKGFE---PSPVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRGKKAR 422
           IE L+   LP+E   G+E   P P  + E   R ++ ++++ ++ K Q K  +Q G++ +
Sbjct: 356 IEALIGKTLPREVQPGYEMGAPLPARYRELDTRVTS-KAAQPKRGKGQ-KFGSQDGRRGQ 413