Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  344 bits (882), Expect = 3e-99
 Identities = 191/409 (46%), Positives = 266/409 (65%), Gaps = 17/409 (4%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           FSQL L   L   L  LG    TPIQ +AIP +L G+D+LAGA+TG+GKTAAF LPL+Q+
Sbjct: 26  FSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQK 85

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTEL----KIVAVYGGTSMKV 123
            + Q   R      + ALVLVPTRELAQQV DS  +Y  G EL    K++AV+GG S+  
Sbjct: 86  LVGQ---RAGGGNHVGALVLVPTRELAQQVADSFISY--GAELAPRAKVIAVFGGVSVNS 140

Query: 124 QLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
           Q+  LRGG DIL+ATPGRLLD     ++ L +++ LVLDEADRML++GF  +L  +L++L
Sbjct: 141 QMLALRGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQL 200

Query: 184 SPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLS 243
              +QTL FSATF  ++ ++  +++ DP+E+Q+  + S    ++Q VY V++  K  LL+
Sbjct: 201 PDQKQTLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQSA--DIEQRVYTVNRSNKTALLA 258

Query: 244 YLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVR 303
            LI  + W+QVLVF   ++  D LA++L+  GI A   +GDK+QGAR + LD FK G++ 
Sbjct: 259 ELIKVRQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEIT 318

Query: 304 ALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQL 363
            LIATD+AARG+DI +L  V+N+++P    DY+HRIGR+GRAG  G A+SL+SHDE    
Sbjct: 319 VLIATDIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHF 378

Query: 364 EAIERLLNTRLPQEWLKGFE-----PSPVVHEENSP-RRSAGRSSEKRK 406
           + IE+    RLP+E   GFE     P      ++ P  +  G   +KRK
Sbjct: 379 KVIEKKNKLRLPREQYPGFEADAEAPLDCPSRQDKPMAKPEGTGKKKRK 427