Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  397 bits (1020), Expect = e-115
 Identities = 211/412 (51%), Positives = 286/412 (69%), Gaps = 5/412 (1%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++F+ LGL + +L  +++ G   P+PIQ QAIP VL GKDV+A AQTGTGKTA F LPL+
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
           +   + P    A SK++RALVL PTRELA Q+ +S+  Y +   L+   V+GG  +  Q+
Sbjct: 61  ELLSQGP---RARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQI 117

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
           + L+ GVDIL+ATPGRLLD     ++   ++E LVLDEADRMLDMGF+ D++++L  L P
Sbjct: 118 SQLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPP 177

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245
            RQ L FSATF  +I+ +A  ++ +P+E+ VTP NSTA TVQQ++ PVDK +K   L  L
Sbjct: 178 KRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKL 237

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           I   +WQQVLVF++T+ G++ LA+ L+  GI A +I+G+KSQGAR KAL +FK+G VR L
Sbjct: 238 IQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVL 297

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATD+AARGLDI QL QVVN+D+P   EDYVHRIGRTGRAG  G AVSL+S +E   L  
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLAD 357

Query: 366 IERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQLKIHAQR 417
           IERL+   LP+  ++GFEP+  + E N   +  G+    R  K   K ++QR
Sbjct: 358 IERLIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKP--KSNSQR 407