Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  301 bits (772), Expect = 3e-86
 Identities = 162/375 (43%), Positives = 231/375 (61%), Gaps = 8/375 (2%)

Query: 1   MSELSITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAF 60
           MS    TF +LGL   LL  L ELG   PTPIQ  +I  ++ GKD+L  AQTGTGKT AF
Sbjct: 1   MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF 60

Query: 61  GLPLIQRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTE-LKIVAVYGGT 119
            LPL+          + N    + LVL PTRELA QV ++  +Y+K  + L ++ +YGG 
Sbjct: 61  ALPLLNAI-------DPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQ 113

Query: 120 SMKVQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRV 179
           SM  QLN LR G  I++ TPGR++DH    +L L  +  LVLDEAD ML MGF+ D++ +
Sbjct: 114 SMHQQLNALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWI 173

Query: 180 LRRLSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKR 239
           L      RQ   FSAT   +IK VA + ++ P+ + +  S++T E+++Q    V +  K 
Sbjct: 174 LEHTPQERQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKL 233

Query: 240 ELLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA 299
           E L  ++  +N + +++F +TR     LAE+L+  G  +  ++GD +Q AR++A+D  K 
Sbjct: 234 EALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKR 293

Query: 300 GKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
           GK+  LIATDVAARGLD+ ++  V+NYD+P+  E YVHRIGRTGRAG  G+A+  ++H E
Sbjct: 294 GKLDILIATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHRE 353

Query: 360 QPQLEAIERLLNTRL 374
              L  IER   +R+
Sbjct: 354 MRMLRTIERATKSRI 368