Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  385 bits (990), Expect = e-111
 Identities = 213/416 (51%), Positives = 280/416 (67%), Gaps = 6/416 (1%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++FS LGL + L   +SE G   P+PIQ QAIP VL GKDV+A AQTGTGKTA F LPL+
Sbjct: 1   MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
           +   +     +A S + RALVL PTRELA QV +S++ Y K   L+   V+GG  +  Q+
Sbjct: 61  ELLAKG---HKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQI 117

Query: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
           N LR GVD+L+ATPGRLLD     ++   ++E+LVLDEADRMLDMGF+ D++++L  L  
Sbjct: 118 NKLRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPA 177

Query: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245
            RQ L FSATF  +I+ +A  ++  P+E+ VTP N+ A TV+Q + PVDK +K  LL  L
Sbjct: 178 KRQNLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQL 237

Query: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305
           I  +NWQQVLVF++T+ G++ LA+ L    I A +I+G+KSQGAR KAL DFK+G+VR L
Sbjct: 238 IKQENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVL 297

Query: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365
           +ATD+AARGLDI QL QVVN+D+P   EDYVHRIGRTGRAG  G AVSL+S +E   L+ 
Sbjct: 298 VATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKD 357

Query: 366 IERLLNTRLPQEWLKGFEPSPVVHEENSPRRSAGRSSEKRKLKAQLKIHAQRGKKA 421
           IERL+N  L ++ ++GF P   VH       +      K K  A  + H   GK A
Sbjct: 358 IERLINRVLERQEVEGFSP---VHALPETTLNPQGKDTKVKAVANHRKHRSAGKPA 410