Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  347 bits (889), Expect = e-100
 Identities = 188/407 (46%), Positives = 265/407 (65%), Gaps = 10/407 (2%)

Query: 7   TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
           +F++LG+ + L N L+ELG  +PTP+Q   IP VL G+DVLAGA TG+GKTAAF LPL+Q
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query: 67  RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAK--GTELKIVAVYGGTSMKVQ 124
           R  E     + ++  +R LVLVPTRELAQQV DS  +YA     +LKIVA +GG S+ +Q
Sbjct: 70  RLSEAK-SADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQ 128

Query: 125 LNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLS 184
           +  LR G D+L+ATPGRLLD     +L L +V   VLDEADRML +GF  +L++VL  L 
Sbjct: 129 MQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALP 188

Query: 185 PLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSY 244
             +QTL FSATF  +++A+  +++  P+E  +     +  T++Q V  V++++K  LL++
Sbjct: 189 RQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQES--TIEQRVITVNREQKTALLAH 246

Query: 245 LIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
           LI    W Q L+F   +   + LA++L   GI A   +GDK+QGAR + LD FK G++  
Sbjct: 247 LIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISV 306

Query: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLE 364
           LIATD+AARG+DI +L  V+N+D+P    DY+HRIGR+GRAG AGLAV+L+SH+E     
Sbjct: 307 LIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFG 366

Query: 365 AIERLLNTRLPQEWLKGFE-----PSPVVHEENSPRRSAGRSSEKRK 406
            IE+    +L +E + GFE     P  V+ +E    +  G   +KRK
Sbjct: 367 VIEKKNKIKLVREQIPGFEANAEIPLEVLAQEKPQAKPEGTGKKKRK 413