Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  352 bits (904), Expect = e-101
 Identities = 193/410 (47%), Positives = 267/410 (65%), Gaps = 5/410 (1%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           FSQLGL S L+  ++ELG  +PTPIQ QAIP +L GK+VLA AQTGTGKTA+F LPL+ R
Sbjct: 3   FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
           F + P   +   K +R+++L PTRELA QV  ++  YAK   L  +A+YGG     Q   
Sbjct: 63  FADAP---KIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKR 119

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           L  GVD+L+ATPGRLLD    +++   +V VLVLDEADRMLDMGF+ D+  ++ +L   R
Sbjct: 120 LIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQR 179

Query: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIG 247
           Q L FSAT   ++KA+A   + D IE++++  N+ +  + Q +  VDK RK  LLS+LI 
Sbjct: 180 QNLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIK 239

Query: 248 SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIA 307
             NW Q L+F +T+ G+  L  +L+  GI A + +  +SQ  R++ L DFKAGKV  L+A
Sbjct: 240 ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299

Query: 308 TDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIE 367
           T V +RG+DI  LE+V+NYD+P +A+DY+HRIGRTGRAG  G A+S +S D+   L AIE
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIE 359

Query: 368 RLLNTRLPQEWLKGFEPSPVVHEE--NSPRRSAGRSSEKRKLKAQLKIHA 415
           R L   + ++ ++GFEP   V     +   +SA RS+ K    A +K  A
Sbjct: 360 RRLGHIIERKNIEGFEPKKAVPISILDFVPKSASRSAHKPNNTAAVKDQA 409