Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  371 bits (952), Expect = e-107
 Identities = 196/376 (52%), Positives = 262/376 (69%), Gaps = 5/376 (1%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           F  LGL S LLN ++E G    T +QQQ IP  L GKD++A AQTGTGKTAAF LP++++
Sbjct: 3   FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
              +P    A+   +RALV+ PTRELA QV  ++Q Y++   LK +AVYGG +M  Q   
Sbjct: 63  LAAKP----ADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKG 118

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           +  GVDIL+ATPGRL D     +L L  V  LV+DEADRMLD+GF+ D+++V R ++P+ 
Sbjct: 119 VEQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVH 178

Query: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIG 247
           QT+ FSAT+   +K ++++++  P  V V   N+TA TV+Q+VY VDK+RK ELLS L+G
Sbjct: 179 QTMLFSATYSDAVKQLSHKMLNQPQWVNVA-ENTTASTVEQLVYRVDKRRKAELLSELVG 237

Query: 248 SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIA 307
             NW+QVLVF  T++ ++ L +EL LDGI A   +GDK+QGAR + LDDFKAGK+R L+A
Sbjct: 238 RNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVA 297

Query: 308 TDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIE 367
           TDVAARGLDI  L  V+N ++PF AEDYVHRIGRTGRAGL+G A+S +S  +   L  IE
Sbjct: 298 TDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIE 357

Query: 368 RLLNTRLPQEWLKGFE 383
            L+  +LP     G+E
Sbjct: 358 ALIGEKLPVTVQPGYE 373