Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  391 bits (1004), Expect = e-113
 Identities = 198/400 (49%), Positives = 278/400 (69%), Gaps = 4/400 (1%)

Query: 8   FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
           F        +L  +S+ G    TPIQQQAIP + +G+DVLA AQTGTGKTAAF LP++Q+
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 68  FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
            +E P   E      R L+L PTRELA QV ++++AY+K     ++ +YGG  ++ Q   
Sbjct: 63  MVENP--SETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 128 LRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLR 187
           L+ G DI++ATPGRLL+H    +L L  V+ LVLDEADRMLDMGF  D+Q++L+ ++  R
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKR 180

Query: 188 QTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLIG 247
           Q L FSATF S +K +A  +M  P  +     N+TA+TV Q+VYPV+++RKRELLS LIG
Sbjct: 181 QNLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 248 SKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRALIA 307
            KNWQQVLVFT TR  +D L +EL LDGI +  ++G+K+QG+R++AL +F +GKVR L+A
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300

Query: 308 TDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEAIE 367
           T+VAARGLDI  LE VVN+D+PF AEDYVHRIGRTGRAG +G+A+S +S +E+  L  IE
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE 360

Query: 368 RLLNTRLPQEWLKGFE--PSPVVHEENSPRRSAGRSSEKR 405
           +L+  ++ +  + G+E     ++ ++   RRS  +  +++
Sbjct: 361 KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRQ 400