Pairwise Alignments

Query, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., ATP-dependent RNA helicase RhlE from Klebsiella michiganensis M5al

 Score =  412 bits (1059), Expect = e-119
 Identities = 212/389 (54%), Positives = 286/389 (73%), Gaps = 7/389 (1%)

Query: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
           ++F  LGL+  +L  ++E G   PTPIQQQAIP VLQG+D++A AQTGTGKTA F LPL+
Sbjct: 1   MSFDSLGLNPEILRAVAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 66  QRFIEQPWQREANSK---EIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMK 122
           Q  +    Q+E ++K    +RAL+L PTRELA Q+ ++++ Y+K   ++ + V+GG S+ 
Sbjct: 61  QHLV----QKEPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNVRSLVVFGGVSIN 116

Query: 123 VQLNHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRR 182
            Q+  LR GVDIL+ATPGRLLD  H  ++ L KVEVLVLDEADRMLDMGF+ D++RVL +
Sbjct: 117 PQMMKLRSGVDILVATPGRLLDLEHQNAVSLDKVEVLVLDEADRMLDMGFIHDIRRVLAK 176

Query: 183 LSPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELL 242
           L   RQ L FSATF  +IK++A +++ +P+E++V   N+ +E V Q+V+ VDKKRKRELL
Sbjct: 177 LPAKRQNLLFSATFSDEIKSLAEKLLHNPLEIEVARRNTASEQVSQLVHFVDKKRKRELL 236

Query: 243 SYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
           S +IG  NWQQVLVFT+T+ G++ LAE+L  DGI++ +I+G+KSQGAR +AL DFK+G +
Sbjct: 237 SQMIGEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGGI 296

Query: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQ 362
           R L+ATD+AARGLDI +L  VVNY++P   EDYVHRIGRTGRA   G A+SL+  DE   
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 363 LEAIERLLNTRLPQEWLKGFEPSPVVHEE 391
           L  IERLL   +P+  L G+EP P +  E
Sbjct: 357 LHDIERLLKKEIPRIALAGYEPDPSIKAE 385