Pairwise Alignments

Query, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 371 a.a., Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) from Pseudomonas fluorescens FW300-N1B4

 Score =  165 bits (418), Expect = 1e-45
 Identities = 86/219 (39%), Positives = 140/219 (63%), Gaps = 4/219 (1%)

Query: 3   LTGYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGLPE 62
           L GY   L+  +W+TL+++  SLLV + L L+ A  +++ LKL+  P T   T+IRG+P+
Sbjct: 15  LQGYGPLLLHGTWVTLKLSALSLLVSMALGLLGAAAKLSPLKLLNLPATFYTTLIRGVPD 74

Query: 63  LLVVLFIYFGSTQVLFFITGE----FIEISPFISGVIALSLIFASYASQTLRGALKAVGR 118
           L+++L I++     L  +T      ++EI PF++GV+ L  I+ +Y ++T RGA+ +V R
Sbjct: 75  LVLMLLIFYSLQGWLSSLTEAMDWPYMEIDPFVAGVVTLGFIYGAYFTETFRGAILSVPR 134

Query: 119 GQREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLLKQAQ 178
           GQ+EAA++ G+     F  +V PQ +R ALP L N WLVLLK TALVS+IG++DL+K AQ
Sbjct: 135 GQQEAAASFGLNRWQRFRFVVFPQMMRFALPSLGNNWLVLLKATALVSIIGLSDLVKVAQ 194

Query: 179 LTSAATHEAFTWYATAAVVYLVITLITQRVVKVIDNKFS 217
               +T     +   A  +YL+IT  +  V++V++ +++
Sbjct: 195 EAGKSTFNMLDFLLLAGALYLLITSASNYVLRVLERRYN 233