Pairwise Alignments

Query, 229 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 232 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

 Score =  156 bits (394), Expect = 4e-43
 Identities = 83/221 (37%), Positives = 137/221 (61%), Gaps = 6/221 (2%)

Query: 1   MVLTGYSLSLVQASWMTLQIALASLLVGLLLALVFAGGEMAKLKLIKWPTTLLVTVIRGL 60
           M   GY   L+  + MT+++ L ++  GL+L L+    ++++  L +        + RGL
Sbjct: 1   MDFQGYGDLLITGAAMTIKLVLGAVSFGLVLGLIGTTLKLSRNALARAVGNAYTDLFRGL 60

Query: 61  PELLVVLFIYFGSTQVLFFITGEF------IEISPFISGVIALSLIFASYASQTLRGALK 114
           PELLVVL +Y+G+  ++ ++  +       + ISP++ GV++L LIF +YAS+  RGA+ 
Sbjct: 61  PELLVVLIMYYGAEALVRWLVNDVLALDVAVSISPYVGGVLSLGLIFGAYASEVFRGAIL 120

Query: 115 AVGRGQREAASALGIPPSHAFIRIVLPQAVRHALPGLMNQWLVLLKDTALVSLIGVTDLL 174
           A+ RG  EAA A G+ P   + RI+LPQ  R ALPGL N +LV LKDTALVS IG+ +L+
Sbjct: 121 AIPRGHVEAARAFGMGPVLTYRRIILPQVWRVALPGLGNLFLVSLKDTALVSAIGLNELM 180

Query: 175 KQAQLTSAATHEAFTWYATAAVVYLVITLITQRVVKVIDNK 215
           + A +   +T + FT+   AA +YL +T+++  V+ +++ +
Sbjct: 181 RSANIAGRSTRDYFTFLLAAAFLYLAMTMVSMAVIALLERR 221