Pairwise Alignments

Query, 301 a.a., LysR family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 293 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 87.4 bits (215), Expect = 4e-22
 Identities = 79/290 (27%), Positives = 136/290 (46%), Gaps = 29/290 (10%)

Query: 7   LQTFKTLVDTGHFTKTAEKLFMTQPGVSQHIRKLEEACQHPLIHRIN----KSFELTDQG 62
           L+    L  TG FT  A+KL M QP +SQ I++LE +    LI+R +    K   LT +G
Sbjct: 6   LKHLDALAITGSFTAAAKKLNMAQPALSQSIKRLELSLGVTLINRTSNKHDKHLALTAEG 65

Query: 63  RMVYEYATQLAKNERRLLEQIHETEPF-AGRYRIACSGSLSLVIYPP-LLALQQLHPKLC 120
            +++++AT + K  ++   QI       +G  RIA  G L     P  L+A +  +P+L 
Sbjct: 66  LVLHQHATLILKQIKQAEAQIRAMANLTSGEVRIAVPGMLGSFYLPSRLMAFRHQYPELK 125

Query: 121 IELEAAPNHTILKAIKEGDVDVGIVTSQPSQGVFESEVLGEEPLYLVLPHDHP------T 174
           + L        L+ +++ +VD+ I+T+Q  Q  F+S++L  E + + +  +HP       
Sbjct: 126 LSLFEGGTRDALRMLQQEEVDIAIITAQDLQPDFDSQLLIREQMVIAMGAEHPLAELPAV 185

Query: 175 EPDQLADHLLQLGLIGHPDIDHYFSLY--LAKSTNLTLTVLNSESFPRSGYVNQIQQILL 232
             +   DH L +   G+   +   S    L K  N+            +  +N I+QI  
Sbjct: 186 SLNDFFDHELVMFKTGYFHREWILSQAKDLGKKPNIAF---------ETNLINLIKQI-- 234

Query: 233 PVAKGLGFTVLPKSAVENFPLREQISVFENPAPVTETLYLVKKRQRDLPQ 282
            V++G G T + + A+     ++ I       PV   L++  K+QR + Q
Sbjct: 235 -VSQGFGITSVLEMAISP---KDDILAKPFDPPVFLNLHIAWKKQRPVSQ 280