Pairwise Alignments

Query, 384 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Arabinose efflux permease from Pseudomonas stutzeri RCH2

 Score =  133 bits (334), Expect = 1e-35
 Identities = 91/335 (27%), Positives = 162/335 (48%), Gaps = 21/335 (6%)

Query: 18  LTLYAIAAGYLMSLVPLMLPHYQLESDLASWLASVFYAGLLAGALVAEPFVNRLGHRKAF 77
           LTL  +A GY   +V L++  Y              +AG L G  +A   + R+GH + F
Sbjct: 29  LTLRGVAEGYSTGMVGLLMSGY--------------FAGFLIGTWLAPSLIRRIGHIRTF 74

Query: 78  VWCLSLLQLSIVVMPLLPYASVWLLARLVAGIAVAGIFVVVESWL---LHGDEQGRAKRL 134
            +  S+   ++++  ++    VWL+ R++ G+A+  +++V+ESWL   + G+++G+    
Sbjct: 75  SFYASVAATAVLLHVMIVNPWVWLVLRVIYGVALVTLYMVIESWLNAQVSGEKRGQV--F 132

Query: 135 GIYMVSLYGGTALGQMAIGQLGVAGAVPFIAITTLLLIASIVLMYVDSDQPSTQQASSLS 194
            +YM    G  A  Q  +G         F   T L+  A + +      QPS        
Sbjct: 133 AVYMAVNLGALAAAQQLLGLDSPMEFTLFALATILIGSAMMPITLTRQPQPSLPDIPPTD 192

Query: 195 LRQIFKLSKAAMIGCLVSGLTLGAIYGLMPVELANRGISHTDLGNLMALVILGGMAVQ-P 253
           L Q+ +++   ++   +SG  LG  +GL PV  +  G     +G LM++ ILGG  +Q P
Sbjct: 193 LLQLARIAPLPLMAAGISGFVLGGFWGLAPVYASEIGFDAAGVGLLMSITILGGAVLQWP 252

Query: 254 LVPWLSKFLGRTLQMALFCLLGTAAITLTVFDDSLLVLGVSLFILGMATFALYPIAINLG 313
           +  +  K   RT+ + +  L    A+ +       L+LG+ +F+ G   F++Y IA+   
Sbjct: 253 IGLFSDKHERRTVLLWVVALAAVLALAVAPLLAGSLLLGL-MFVWGGLAFSIYSIAVAQM 311

Query: 314 CDKLDASYIVSATQVMLLSYSVGSVVGPVLADCFM 348
            D+L+   I+S +  +LL+   G+ +GPV A   M
Sbjct: 312 VDQLNPDEILSGSSGLLLANGFGAALGPVAAGGLM 346



 Score = 26.6 bits (57), Expect = 0.001
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 202 SKAAMIGCLVSGLTLGAI-YGLMPVELANRGISHTDLGNLMALVILGGMAVQPLVPWLSK 260
           S  A I  L++G+ L  + +GL+   L  RG++      ++ L++ G  A   +  WL+ 
Sbjct: 3   SLIAPISSLLAGVALLLLGHGLLNTLLTLRGVAEGYSTGMVGLLMSGYFAGFLIGTWLAP 62

Query: 261 FL----GRTLQMALFCLLGTAAITLTVFDDSLLVLGVSLFILGMATFALYPI 308
            L    G     + +  +   A+ L V   +  V  V   I G+A   LY +
Sbjct: 63  SLIRRIGHIRTFSFYASVAATAVLLHVMIVNPWVWLVLRVIYGVALVTLYMV 114