Pairwise Alignments

Query, 384 a.a., MFS transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., drug resistance transporter, Bcr/CflA family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 63.9 bits (154), Expect = 8e-15
 Identities = 84/370 (22%), Positives = 155/370 (41%), Gaps = 29/370 (7%)

Query: 34  LMLPHYQ-LESDLASWLASV------FYAGLLAGALVAEPFVNRLGHRKAFVWCLSLLQL 86
           + LP ++ +ES L S  + V      F AGL  G L+  P V++LG R A +  L++  L
Sbjct: 33  MYLPAFKAIESSLNSSPSQVAMSLTCFLAGLALGQLIYGPLVSKLGKRYALLIGLAVFAL 92

Query: 87  SIVVMPLLPYASVWLLARLVAGIAVAGIFVVVESWLLHGDEQGRAKRLGIY-----MVSL 141
           S V +       +  +AR    I      V+ ++ ++  ++    K  GI+     +V+L
Sbjct: 93  SSVAIANSDSVMMLNIARFFQAIGACSAGVIWQAIVV--EQYDAEKAQGIFSNIMPLVAL 150

Query: 142 YGGTA--LGQMAIGQLGVAGAVPFIAITTLLLIASIVLMYVDSDQPSTQQASSLSLRQIF 199
               A  LG   + + G       + +   LL+   +       +    + S++S  QI 
Sbjct: 151 SPALAPILGAYILNEFGWRAIFISLCVIAFLLVLMTLYFVPGKSKHQDIKPSAVSYGQIL 210

Query: 200 KLSKAAMIGCLVSGLTLGAIYGLM---PVELANRGISHTDLG----NLMALVILGGMAVQ 252
           K ++  +   ++ G   GA +  +   P+ +   G   T++G        + I+GG A +
Sbjct: 211 KNTR-YLGNVVIFGACSGAFFAYLTVWPIVMEQHGYQATEIGLSFIPQTIMFIVGGYASK 269

Query: 253 PLVPWL--SKFLGRTLQMALFCLLGTAAITLTVFDDSLLVLGVSLFILGMATFALYPIAI 310
            L+  +   K L   L +   C++     TL     ++  L +S  IL  A  A+YPI +
Sbjct: 270 LLIKRIGADKTLNVLLSIFGICVVSIVLFTLLFKTITIFPLLISFSILAAANGAIYPIVV 329

Query: 311 NLGCDKLDASYIVSATQVMLLSYSVGSVVGPVLADCFMQDRHGLMAYLFAILLATCLYML 370
           N    +       +A     L  ++      ++A   M    G +A  + IL  + L +L
Sbjct: 330 NSALQQFTQHASKAAGLQNFLQITIAFGASSLVA---MWANFGEVAIGWGILCCSLLVIL 386

Query: 371 IKSVKTKRQW 380
              +KT++ W
Sbjct: 387 GYVLKTEQTW 396