Pairwise Alignments

Query, 386 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., putative outer membrane or exported (RefSeq) from Shewanella amazonensis SB2B

 Score =  150 bits (380), Expect = 5e-41
 Identities = 107/398 (26%), Positives = 188/398 (47%), Gaps = 26/398 (6%)

Query: 9   LAVVMAMAFSSSAFASNLLMDARGAGMGNTGVSTADYLLAPYYNPALTAV--YRKNDSFG 66
           +A  + +     +FA+  + +AR   +G TGV++A    AP+ NPAL ++  Y + D FG
Sbjct: 6   IAASLGLILCPYSFAAQDVFEARSDALGGTGVASASLEAAPWMNPALLSLPGYTEGD-FG 64

Query: 67  ILLPSIGLRAEDKDESLKTIDDLQDSIEQFERAGVGAATQENVDQLNRYLDQLADD---- 122
           +L+P +G    D+D      D L+D+ +  +    GA  + +VD ++ +   L  D    
Sbjct: 65  LLIPVLGAEVSDQDNMTDKFDTLEDNYDGLD----GAIDRGDVDAIDSFRQALLGDLRGL 120

Query: 123 --KPLAVTAGIGIAVALPLDAVSLNFFTRGYAEVIAKANVAAKSGNSANEVKTRYESSDV 180
                  +AGIG + A+P   +S   + R Y + IA A+++         +  +   +  
Sbjct: 121 DGNTAYASAGIGFSFAMPTKGISWGIYYRSYLDGIALADISDADIQLLEALDPQAPPALD 180

Query: 181 DLTAFGY------TEVGLAVGKQVVLGGQTVALGVTPKVQQLRTYQDNASVKSFDLDDYD 234
           DLT+ G       +E+ L+V   + +    V +G+TPK+Q+L ++    S  +FD  D+D
Sbjct: 181 DLTSQGRVIAGASSELALSVSLPLSIVNMPVTVGLTPKLQRLDSFNYAVSANNFDAGDFD 240

Query: 235 KSEVK--DNSFNLDMG-AVWLIDQYRVGIVAKDLFAKDIQTQNRNNT---YKLDTQIAVS 288
             + +  D  FNLD G A+  +D   +G+V ++L  +++ T         Y+    +   
Sbjct: 241 SDDYRNDDTGFNLDAGIAMMPMDGLTLGLVGRNLIERELDTVESEGVSAIYRAGPMVTFG 300

Query: 289 GSYVSDFFIAAVDLDLTKQRRFNGDNDDTQFMRFGVEGNAWGWAQLRAGYEVDLQNSLDN 348
            ++ S  +  + DLDL    +F G  + T++ R G E +A  W  LR GY  DL +   +
Sbjct: 301 AAFQSGNWQLSTDLDLMDNEKFVG-LEGTKYWRLGAEWHALDWLSLRLGYRQDLNDMTAD 359

Query: 349 SVSVGLGVSPWDVVSLDLAGSYAGDNQFGLSANLAFTF 386
             S G G        LDLAG +   +  G     ++ F
Sbjct: 360 IYSFGTGFQIGSGFKLDLAGMWGDKDTVGAVLQSSYHF 397