Pairwise Alignments

Query, 386 a.a., conjugal transfer protein TraF from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., conjugative transfer protein from Marinobacter adhaerens HP15

 Score =  162 bits (411), Expect = 1e-44
 Identities = 124/431 (28%), Positives = 210/431 (48%), Gaps = 53/431 (12%)

Query: 5   TKSTLAVVMAMAFSSSAFASNLLMDARGAGMGNTGVSTADYLLAPYYNPALTAV--YRKN 62
           TK +LA+ +++A SS+  +    M AR   MG TGV+ A    AP  NPA+ A   +  N
Sbjct: 52  TKLSLAIGLSIATSSALASPQSFMSARSFAMGGTGVAVATPSSAPMDNPAMMASDHHSWN 111

Query: 63  DSFGILLPSIGLRAEDKDESLKTIDDLQDSIEQFERAGVG--------AATQENVDQLNR 114
           D FG++LPS+  RA D++E++  +DD+QD I   E    G         + Q+    L+ 
Sbjct: 112 DDFGLMLPSVNARAADEEETVDQVDDIQDVITDLESLVSGFDPNTDDPQSIQDGAADLSD 171

Query: 115 YLDQLADDKPLAVTAGIGIAVALPLDAVSLNFFTRGYAEVIAKANVAAKSGNSANEVKTR 174
            L +  D   + V AG+G+ +A+P  ++++  FT        + +V+ +   + N + T 
Sbjct: 172 RLTEF-DRDTMRVNAGLGLGLAVPGQSLAVGVFTNANLTATVRGDVSDQDITALNAIATA 230

Query: 175 YESSDVD-------------------LTAFGYTEVGLAVGKQVVL-GGQTVALGVTPKVQ 214
             + DV                    + A    EVG++  +   L  G +  LG++PK  
Sbjct: 231 ATAQDVQNAVDQISTNGTLNLTSQGKILASAVGEVGISFARAFELQDGNSFQLGLSPKYV 290

Query: 215 QLRTYQDNASVKSFDLDDY--DKSEVKDNSFNLDMGAVWLI---DQYRVGIVAKDLFAKD 269
           +LRT+Q   +V  F+ D++  D+ + + + FNLD+GA +     +Q+  GIV K+L   +
Sbjct: 291 ELRTFQYTEAVSGFEDDEFDDDQYQTEKSGFNLDVGAAYSFGDSNQWNTGIVVKNLIPME 350

Query: 270 IQTQ-------NRNNTYKLDTQIAVSGSYVSDFFIAAVDLDLTKQRRFNGDNDDTQFMRF 322
           + +            T KLD  +    ++ S++ +   ++DLTK+  F G  DDTQ+   
Sbjct: 351 LDSAASRPLLGEEVRTLKLDPMVTAGIAHKSEYHVITAEVDLTKKEAF-GFEDDTQWAAL 409

Query: 323 GVEGNAWGWAQLRAGYEVDLQNSLDN-------SVSVGLGVSPWDVVSLDLAGSYAGDNQ 375
           G E +A+ +AQLR G   +L ++ DN         + GLG++    V LD+   Y+ D  
Sbjct: 410 GAEFDAFRYAQLRVGVRHNLASNDDNDGIEEKTQFTAGLGLNIVG-VRLDIGALYS-DAD 467

Query: 376 FGLSANLAFTF 386
            G +  L   F
Sbjct: 468 AGAALELGTAF 478