Pairwise Alignments

Query, 364 a.a., autoinducer 2-binding periplasmic protein LuxP from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., Periplasmic sugar-binding domain protein from Pseudomonas fluorescens FW300-N2E2

 Score = 53.5 bits (127), Expect = 8e-12
 Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 27/253 (10%)

Query: 74  PGQQISDYWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIF 133
           PG+    +WV   +  +   + LG+R ++      P    RQ    +     ++ DYL+ 
Sbjct: 6   PGRSTETFWVSYSEFMQAAANGLGLRLRVEYAERDPERMIRQAQDVITSV--DRPDYLVL 63

Query: 134 TLDTTRHRKFIEHVLHSSETKLILQNITTPVKD-----WQGKQPMMYIGF----DHEYGA 184
             +     + ++ +   S  KL L N T           QG  P   +G     D   G 
Sbjct: 64  VNEQYVAPRILQ-LAQGSGIKLFLVNNTLTSDQARLLAQQGAPPPELLGSLVPDDERSGY 122

Query: 185 QLLAQYYQAHAPKKP---YSVLYFS------EGYISEARGDTFIQDMNAVHHFPLASSYY 235
            +L +  + H P  P     +L FS         + E      + +   VH   L    Y
Sbjct: 123 LMLTELLRQHGPLAPGQTLDLLAFSGKKSTPSAQLREKGLYRALAEHPQVH---LRQLVY 179

Query: 236 TKATEQSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQ---DILVNGWGGGS 292
            +   +  YE    + K  P+   +++   ++ALGA QA +E  RQ   D+L +      
Sbjct: 180 GEWNRERSYEQASQLAKRYPQTALVWSANDEMALGAMQAFEEAGRQPGKDVLFSAMNSSR 239

Query: 293 AELEALAKGELDV 305
           A L+A   G L V
Sbjct: 240 AALQARIDGRLSV 252