Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  216 bits (549), Expect = 1e-59
 Identities = 142/418 (33%), Positives = 222/418 (53%), Gaps = 35/418 (8%)

Query: 437 LSPIMV-EGQIISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPL 495
           ++PI   +G++I  +   QDIT       +  AA+  AE +   ++ FLA MSHE+RTP+
Sbjct: 598 ITPIRTADGELIGHLGIAQDITERLHHSAELHAAKSSAEAANAAKSLFLANMSHEIRTPM 657

Query: 496 NGVLGVSQLLKRTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRL 555
           N V+G+S LL  T LND+QR+ +  L  +G  LL ++NDILD +++E G+ R++ N F  
Sbjct: 658 NAVIGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAGEMRLEHNPFSP 717

Query: 556 KELVCAIDRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGS 615
           ++L+  +  ++ P   EKGL   VN   +    +  D +R+NQIL NL+ NA+KFT  G 
Sbjct: 718 RQLLDELGELFTPQAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLVGNALKFTSVGG 777

Query: 616 IRVELQLIEGD--PLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLT 673
           + V +   E D      L   V DTG GI    L  +F PF QA+++TTR +GG+GLGL+
Sbjct: 778 VDVTVSR-EDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTRRFGGTGLGLS 836

Query: 674 IVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIELVE---KPDAPQQLLPAPDPQPLFDKTL 730
           +V  L E + G++ V SE G G+ F ++LP ++ +   +P  P               +L
Sbjct: 837 VVRGLAEQMGGRIGVESELGTGSEFWVELPFQISQSDLEPSGP-------------GSSL 883

Query: 731 RVLLVEDNHTNAFIAQAFCRKYGLDVSWVT------DGLQAIEELKIHDYDLVLMDNQLP 784
            V+L+ D+  ++   Q  CR  G  V+ +T        LQ    +     D++L+D Q P
Sbjct: 884 EVMLLSDDAQSSMALQRLCRGLGWRVASLTGEHDLRTALQERNHVNAALPDVLLVDWQQP 943

Query: 785 YLDGVETTRTIKKVLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKAL 842
               VE  + + +   LPV++   +     E R A  H   + VL+KPL    L  A+
Sbjct: 944 Q---VEEVQQLIEATPLPVILVTSS-----EIR-AELHPLVDKVLLKPLDSSALFNAV 992



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 3/116 (2%)

Query: 730  LRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHD--YDLVLMDNQLPYLD 787
            L +LLV+D+  N  +A    ++ G  V   ++GL A+E L+     +D VLMD Q+P +D
Sbjct: 1023 LHLLLVDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDFFDAVLMDVQMPEMD 1082

Query: 788  GVETTRTIKKVLHLP-VVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKAL 842
            G E TR ++  L L  + V A TA  L E R+    AG +  L KPL    L +A+
Sbjct: 1083 GYEATRRLRSELGLTRLPVLALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAV 1138