Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1236 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  221 bits (562), Expect = 3e-61
 Identities = 139/417 (33%), Positives = 228/417 (54%), Gaps = 17/417 (4%)

Query: 433  YRWNLSPIMV-----EGQIISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKM 487
            Y W LS   V     + Q   ++   +DIT     E     A+++AE +   ++EFLA M
Sbjct: 670  YHWMLSRGRVVEFTQDAQPKRMVGTHKDITRHKSNEVALLEAKQDAELANLYKSEFLANM 729

Query: 488  SHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFR 547
            SHE+RTP+N ++G+ QL  RT L ++Q++++     S + LL ++NDILDFS++E GK  
Sbjct: 730  SHEIRTPMNAIIGMLQLAGRTSLTEQQKDYLDKASFSAQSLLRIINDILDFSKIEAGKLE 789

Query: 548  IQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNA 607
            ++K  F L +++     +      EKG+EL++ + ++   +++ D +R+ Q+L NLL+NA
Sbjct: 790  LEKVAFPLDKVLDHSLDLNALRAQEKGIELLLYAPVSAGIMLKGDPLRLGQVLINLLSNA 849

Query: 608  IKFTHQGSIRVELQLI-EGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYG 666
            +KFT  G I +  + + E D    L   V DTGIGI  +    +F+ F QA+ +TTR+YG
Sbjct: 850  VKFTQNGEIELGCEDVGERDHRITLKFWVRDTGIGISREQQDKLFDAFAQADGSTTRKYG 909

Query: 667  GSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIELVEKPDAPQQLLPAPDPQPLF 726
            G+GLGL+I   LV M+ G + V SE G+G+ F   +  E+ E+     +++P   P+ L 
Sbjct: 910  GTGLGLSISKHLVSMMGGTMQVESEPGVGSTFSFTVSFEIAEE----AKVVPMVVPERL- 964

Query: 727  DKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYL 786
              +LR L+V+DN T   I  +  R +  +V   + G +A+ +L     DLVL+D  +P +
Sbjct: 965  -ASLRTLVVDDNPTALQIYSSVMRDFHFEVETASTGAEALYKLCKQQVDLVLLDWMMPEM 1023

Query: 787  DGVETTRTIKKV-----LHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTL 838
            DG++    I ++     L    V+   TA   E  +          +L KP K  +L
Sbjct: 1024 DGIQVIDAIDEMVAEGKLAARPVIIIMTAYAAEPLKVDLDSDRVFAMLQKPFKASSL 1080



 Score = 63.5 bits (153), Expect = 7e-14
 Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 6/142 (4%)

Query: 710  PDAPQQLLPAPDPQPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEEL 769
            P AP+ L PAP  +   +    VLLVEDN  N  +A    +  G +V    +G  ++E +
Sbjct: 1090 PPAPKAL-PAPPVEDEGEHQGVVLLVEDNFINQQVATELLKSAGYEVDVADNGQISLEMV 1148

Query: 770  KIHDYDLVLMDNQLPYLDGVETTRTIKKVL---HLPVVVYACTADGLEETRQAFFHAGAE 826
                YD +LMD Q+P +DG+     ++K      LP++  A TA  +   R+    AG  
Sbjct: 1149 GKRSYDAILMDIQMPVMDGLTAATELRKRYSFDELPII--AMTAHAMSGDREKSLAAGMN 1206

Query: 827  YVLVKPLKEQTLHKALEHFKHH 848
              + KP+    L + L H+  H
Sbjct: 1207 AHITKPIVLNELFETLSHWIGH 1228