Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score =  214 bits (545), Expect = 4e-59
 Identities = 122/394 (30%), Positives = 220/394 (55%), Gaps = 15/394 (3%)

Query: 448  SIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKR 507
            S++    +IT +     +  AA+ +A+ + + +++FLA MSHE+RTP+N ++G+SQL  +
Sbjct: 1005 SVVMSIANITRLKLLSDELMAAKEDADAANQAKSDFLANMSHEIRTPMNAIIGMSQLCLQ 1064

Query: 508  TPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYR 567
            T L+ +QR +V  +  + + LL ++NDILDFS++E GK  I+   F+L  ++  +  ++ 
Sbjct: 1065 TELDRKQRNYVEKIERASKSLLGIINDILDFSKIEAGKLDIEVVPFQLDTILEDLGDMFS 1124

Query: 568  PLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVEL-QLIEGD 626
                +K LEL+ +        +  D +R++Q+L NL+NNAIKFT +G + + + +L   +
Sbjct: 1125 VKAADKQLELLFSVAPGVPTHLEGDPLRLSQVLINLMNNAIKFTERGEVMLSISELARDE 1184

Query: 627  PLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQL 686
               QL   V D+GIG+  +    +F+ F QA+++TTR+YGG+GLGL I   LVE++ G++
Sbjct: 1185 DQVQLKFAVRDSGIGLTAEQQAKLFKSFSQADTSTTRKYGGTGLGLAICKQLVELMGGEI 1244

Query: 687  HVSSEYGIGTRFEIQLPIELVEKP--DAPQQLLPAPDPQPLFDKTLRVLLVEDNHTNAFI 744
             V S++G G+ F   + +++ +    +  Q+L           + + VL+V+DN T   I
Sbjct: 1245 GVDSQFGNGSTFYFTVSVKVAQNAQLNVEQEL-----------EGMAVLVVDDNSTARDI 1293

Query: 745  AQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETTRTIKKVLHLPVV 804
             +   +  G  V     G++A+E+    DY + L+D ++P +DG ET   +++ L  P +
Sbjct: 1294 LRTTLQSMGFSVDSARSGMEALEKCAERDYRIALIDWKMPEMDGTETAARMRE-LKQPPL 1352

Query: 805  VYACTADGLEETRQAFFHAGAEYVLVKPLKEQTL 838
            +   +A    E        G    + KP+    L
Sbjct: 1353 ILMVSAHANSEFIDKVEEMGINGYITKPISASRL 1386



 Score = 70.1 bits (170), Expect = 1e-15
 Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 5/118 (4%)

Query: 728  KTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLD 787
            K  R+LLVEDN  N  +A  F  + G+ +S   +G  A+E+L    +DLVLMD Q+P +D
Sbjct: 1418 KGKRILLVEDNEMNQEVASEFLEQVGVVLSIADNGQIALEKLGQQSFDLVLMDCQMPVMD 1477

Query: 788  GVETTRTIKK---VLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKAL 842
            G + TR ++K   +  LPVV  A TA+ +   ++    AG    + KP++   L++ L
Sbjct: 1478 GYQATRELRKLPGLAELPVV--AMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTL 1533