Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1230 a.a., PAS/PAC sensor hybrid histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  225 bits (573), Expect = 1e-62
 Identities = 140/433 (32%), Positives = 229/433 (52%), Gaps = 27/433 (6%)

Query: 423  DVTTEVDGR--VYRWNLSPIMVEGQIISIITQGQ---------DITTIAEAEKQSQAARR 471
            DV   + G+  +Y W LS     G+++   +  Q         DIT     E     A++
Sbjct: 658  DVEFRMRGKSGMYHWVLS----RGRVVEFTSDNQPKRMVGTHKDITRHKSNEVALLEAKQ 713

Query: 472  EAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCSSGEHLLAV 531
            +AE +   ++EFLA MSHE+RTP+N ++G+ QL  RT L  +Q +++     S + LL +
Sbjct: 714  DAESANLYKSEFLANMSHEIRTPMNAIIGMLQLASRTQLTPQQADYLDKAGFSAQSLLRI 773

Query: 532  LNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNITTAAIVRS 591
            +NDILDFS++E GK  +++  F L +++     +      EKG+EL++ + +T   I+  
Sbjct: 774  INDILDFSKIEAGKLELERVAFPLDKVLDHALDLNALKAQEKGVELLLYAPVTAGLILEG 833

Query: 592  DQIRINQILFNLLNNAIKFTHQGSIRVELQLI-EGDPLAQLVIQVVDTGIGIREQDLTVI 650
            D +R+ Q+L N+L+NA+KFT  G I +  + + E D    L   V DTGIGI ++    +
Sbjct: 834  DPLRLGQVLINMLSNAVKFTQSGEIELGCEDVGERDHRITLKFWVRDTGIGISKEQQESL 893

Query: 651  FEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQLPIELVEKP 710
            F+ F QA+ +TTR+YGG+GLGL+I   LV M+ G + V SE G+G+ F   +  E+ E+ 
Sbjct: 894  FDAFAQADGSTTRKYGGTGLGLSISKHLVSMMGGTMQVQSELGVGSTFSFTISFEIAEEA 953

Query: 711  DAPQQLLPAPDPQPLFDKTLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELK 770
            +    ++P           L+ L+V+DN T   I     R +  DV   ++G +A+ +L+
Sbjct: 954  EVKPLIVPE------VIGNLKTLVVDDNPTALQIYSTAMRDFHFDVDTASNGAEALYKLE 1007

Query: 771  IHDYDLVLMDNQLPYLDGVETTRTIKKV-----LHLPVVVYACTADGLEETRQAFFHAGA 825
                DL+L+D  +P +DGVE  + +  +     L    V+   TA   E  ++       
Sbjct: 1008 HRPVDLLLLDWMMPEMDGVEVIKALDAMVADGRLEKRPVIIMMTAYASEPLKEDLDDLDI 1067

Query: 826  EYVLVKPLKEQTL 838
              +L KP K   L
Sbjct: 1068 YAMLQKPFKASAL 1080



 Score = 59.7 bits (143), Expect = 1e-12
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 729  TLRVLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDG 788
            T ++LLVEDN  N  +A    +  G +V    +G  A++ +    YD VLMD Q+P +DG
Sbjct: 1109 TGQILLVEDNFINQQVATELLKSAGYEVDVAENGQVALDMVDAKQYDAVLMDIQMPVMDG 1168

Query: 789  VETTRTIKKVL---HLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKALEHF 845
            +  T+ ++K      LPV+  A TA  +   R+    AG    + KP+    L   L  +
Sbjct: 1169 LTATKELRKRYTKEELPVI--AMTAHAMSGDREKSLAAGMNAHITKPIVLNELFDTLAQW 1226

Query: 846  KHHH 849
               H
Sbjct: 1227 IVRH 1230