Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1281 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  231 bits (590), Expect = 2e-64
 Identities = 167/534 (31%), Positives = 266/534 (49%), Gaps = 43/534 (8%)

Query: 346  EQSFRRLANKEKQFEDLFNFALSPTMLWNTSGRLIRMNPS--AQIQFLREDAQNHFLFE- 402
            ++  R +A++      LF  +    +L    G +   NP+  A + +  E+ +   +++ 
Sbjct: 661  KEQARAMASEVSMRRALFEHSRDGLVLLTEDGAVAEANPAMAAMLGYTPEEMERLHVWDW 720

Query: 403  --ILERQLLPTITNAAQ--GNNPSDVTTEVDGRVYRWNLSPIMVE--GQIISIITQGQDI 456
               + R+ +  +  A    G     V    DGR +   +S   VE  GQ   ++   +DI
Sbjct: 721  DAAIPREQITAMLRALSKGGEFFQTVHRHKDGRTFNVEVSASRVEWEGQAY-VLCLHRDI 779

Query: 457  TTIAEAEKQSQA------------------ARREAEESARVRAEFLAKMSHELRTPLNGV 498
            T     E++ +                   AR EAE ++R ++ FLA MSHE+RTP+N +
Sbjct: 780  TFRLRLEQELEQHRHHLEELVHARTMELAEARDEAESASRAKSAFLANMSHEIRTPMNAI 839

Query: 499  LGVSQLLKRTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKEL 558
            LG+S LL R   +   RE V  +  +  HLL ++NDILD S++E  K  +   +F L  L
Sbjct: 840  LGLSHLLGREVGDARARERVDKIHGAATHLLNIINDILDLSKIEAEKLHLDMQDFLLARL 899

Query: 559  VCAIDRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRV 618
                + + RP    KGL L  + +     ++R D + + QIL N L+NA+KF+ QG I +
Sbjct: 900  FDNAENLLRPQLEAKGLRLERHLDPALPPVLRGDAMHLQQILVNFLSNAVKFSDQGHITL 959

Query: 619  ELQLI-EGDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHS 677
              +L+       +L ++V D GIGI  +    +F+ F QA+++TTR+YGG+GLGL I   
Sbjct: 960  GARLLSRSQSQVELRLEVADQGIGIAPEQQAALFQAFEQADNSTTRKYGGTGLGLAISKR 1019

Query: 678  LVEMLSGQLHVSSEYGIGTRFEIQLPIELVE------KPDAPQQLLPAPDPQPLFDKTLR 731
            L+ ++ G + V S+ G G+ F I L +E+ +         A Q+L   P          R
Sbjct: 1020 LIRLMGGDIGVDSKPGQGSVFWISLRLEVADTAAGTTAATAEQEL---PARLRARHGGCR 1076

Query: 732  VLLVEDNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVET 791
            +LL EDN  N  +AQ      GL VS   DG QA+   +   +DLVLMD  +P+LDG++ 
Sbjct: 1077 ILLAEDNALNQEVAQDLLHDAGLAVSVAEDGHQAVSLAQSGGFDLVLMDVNMPHLDGLQA 1136

Query: 792  TRTIKKV---LHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKAL 842
            TR I+++     LP++  A TA    E R     AG    + KP+  + L++AL
Sbjct: 1137 TRAIRELPGCADLPIL--AMTAGAFAEDRARCLEAGMNDFVAKPVVPEVLYQAL 1188



 Score = 27.7 bits (60), Expect = 0.005
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)

Query: 186 LYVGIVLNDNFALLENIRSGSNSENLVLAVDTTP 219
           L+ GI+LN+N AL++NIR       +V  V T P
Sbjct: 213 LFGGILLNNNLALIDNIR------EVVFPVGTLP 240