Pairwise Alignments

Query, 857 a.a., autoinducer 2 sensor kinase/phosphatase LuxQ from Vibrio cholerae E7946 ATCC 55056

Subject, 1765 a.a., sensory box histidine kinase/response regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  205 bits (521), Expect = 2e-56
 Identities = 118/359 (32%), Positives = 205/359 (57%), Gaps = 16/359 (4%)

Query: 443  EGQIISIITQGQDITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVS 502
            + Q  S +    D+T +     +   A+ EA+ +++ + +FLA MSHE+RTP+N ++G+S
Sbjct: 1003 QNQFESAVVSMVDMTELKLLSDELLVAKDEADAASKAKGDFLANMSHEIRTPMNAIIGMS 1062

Query: 503  QLLKRTPLNDEQREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAI 562
            QL  +T L+ +Q+ ++  +  + + LL+++NDILDFS++E GK  I+   F+L  ++  +
Sbjct: 1063 QLCLQTQLDKKQKNYLEKIERASQSLLSIINDILDFSKIEAGKLDIENVSFQLDTMLEDL 1122

Query: 563  DRIYRPLCNEKGLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQL 622
              ++     +K +EL+          +  D +R+ Q+L NL+NNAIKFT +G + + L L
Sbjct: 1123 SDMFSERAAQKQIELLFAVAPNVPRHLLGDPLRLGQVLINLMNNAIKFTERGEVLLSLSL 1182

Query: 623  IE--GDPLAQLVIQVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVE 680
            +E   D +  L   V D+GIG+ ++  + +F+ F QA+++TTR+YGG+GLGL I   LVE
Sbjct: 1183 VEQQNDDVV-LRFSVRDSGIGLTQEQQSKLFKSFTQADTSTTRKYGGTGLGLAISKQLVE 1241

Query: 681  MLSGQLHVSSEYGIGTR--FEIQLPIELVEKPDAPQQLLPAPDPQPLFDKTLRVLLVEDN 738
            ++ G + V S+ G G+   F ++L I   +K    Q+L             + +L+ +DN
Sbjct: 1242 LMGGSIGVESQLGHGSTFFFTVKLCISSGQKLFVGQEL-----------DGMSILVADDN 1290

Query: 739  HTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETTRTIKK 797
             T   I +      G +V  V  G +AI      +Y + L+D ++P LDG+ET + IK+
Sbjct: 1291 ATARDIMRTTLESMGFNVDTVRSGDEAIMRCSQQEYAVALIDWKMPNLDGIETAKQIKQ 1349



 Score = 76.3 bits (186), Expect = 2e-17
 Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 20/169 (11%)

Query: 677  SLVEMLSGQLHVSSEYGIGTRFEIQLPIELVEKPDAPQQLLPAPDPQPLFDKTLRVLLVE 736
            S   +L G ++     GI       LP+   +   AP+ LLP         K  R+LLVE
Sbjct: 1386 SASRLLDGIMNALGRSGI-------LPVRRHQDNIAPELLLPL--------KGKRILLVE 1430

Query: 737  DNHTNAFIAQAFCRKYGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETTRTIK 796
            DN  N  +A  F  + G+ +S  T+G  A+++L    +DLVLMD Q+P +DG + T+ I+
Sbjct: 1431 DNEMNLEVATEFLEQVGIILSIATNGQIALDKLAQQSFDLVLMDCQMPVMDGYQATKAIR 1490

Query: 797  ---KVLHLPVVVYACTADGLEETRQAFFHAGAEYVLVKPLKEQTLHKAL 842
               ++  LPV+  A TA+ +   ++    AG    + KP++   L++ L
Sbjct: 1491 QRPELAQLPVI--AMTANAMAGDKEMCLRAGMNDHIAKPIEVNLLYQTL 1537