Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 853 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  117 bits (292), Expect = 1e-30
 Identities = 87/304 (28%), Positives = 147/304 (48%), Gaps = 49/304 (16%)

Query: 22  EKLLEEKSRAL---YDKVLELQSTLEQLNGAQAQLLQSEKMASVGQLAAGVAHEINNPIG 78
           E  ++E+++AL   Y+++L+  ++ EQ   AQ  L Q++KM +VGQL  G+AH+ NN + 
Sbjct: 441 ESRIQERTQALAEVYERLLKEMASREQ---AQEALRQAQKMEAVGQLTGGIAHDFNNMLT 497

Query: 79  FCLSNLNTLRDYAEVFAQLADFVEQSAPSFEGSEFYQAWMRFKQQHDLAFVREDVLSLVE 138
             +  L+ ++ Y            QS    E   F  A +    +   A +   +L+   
Sbjct: 498 GIIGGLDLIQRYI-----------QSGRHGETQRFIDAAVTSANR--AAALTHRLLAFAR 544

Query: 139 ESASGLHRVKDIVTSLQSVSHSSDGRFAECNLNDCIESALRIVWNQFKYTMLVDRQLAEN 198
                L RV+                     LN  IES   ++       + +D +L + 
Sbjct: 545 RQPLNLKRVE---------------------LNQLIESMHDLLSRTLGRHIHIDNRLQQG 583

Query: 199 LPKIKGIAPEIQQVLMNMFINASHACDEHGELTITTDT--LNEKGKA-------WVQVQI 249
           L  +     +++  L+N+ INA  A  + G L + T    L  +G+        +V +++
Sbjct: 584 LWPVSSDENQLESALLNLVINARDAMPDGGSLLLETRNVELYSQGEVGDLAAGRYVILRL 643

Query: 250 ADNGHGISPEHLAKIFDPFFTTKPVGVGTGLGLSIAFGIVEKHQGKISVTSEVGQGTRFT 309
            D+G G+S + LA +F+PFFTTKP+G GTGLGLS+ +G   +  G I + SE G+GT+ +
Sbjct: 644 TDSGCGMSAKVLASVFEPFFTTKPIGQGTGLGLSMVYGFTRQAGGHIQIASEPGEGTQVS 703

Query: 310 LLFP 313
           L  P
Sbjct: 704 LYLP 707