Pairwise Alignments

Query, 315 a.a., two-component sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  143 bits (361), Expect = 1e-38
 Identities = 97/291 (33%), Positives = 151/291 (51%), Gaps = 30/291 (10%)

Query: 36  VLELQSTLEQLNGAQAQLLQSEKMASVGQLAAGVAHEINNPIGFCLSNLNTLRDYAEVFA 95
           V+ +    +++N  +  ++QSEKM SVG LAAG+AHEINNP+G  L N   +R       
Sbjct: 388 VIRIDDITQRIN-MEEMMVQSEKMLSVGSLAAGMAHEINNPLGAILHNAQNIR------R 440

Query: 96  QLADFVEQSAPSFEGSEFYQAWMRFKQQHDLAFVREDVLSLVEESASGLHRVKDIVTSLQ 155
           +L+  +E++  + E     +  +R +  +     R +V  L++       R   IV+ + 
Sbjct: 441 RLSPELERNREAAE-----ETGVRLEAVNQY-LQRREVPQLLDGIQQAGSRAAKIVSHML 494

Query: 156 SVSHSSDGRFAECNLNDCIESALRIVWNQFKYTMLVD-------RQLAENLPKIKGIAPE 208
           S S  S+ + A+C+L   I+ AL I  N F      D       R     + ++  I  E
Sbjct: 495 SFSRMSNRQLADCHLPVLIDQALEIAGNDFALMEGFDFKAIDIVRDFDPRVDRVPCIGNE 554

Query: 209 IQQVLMNMFINASHACDEH-----GELTITTDTLNEKGKAWVQVQIADNGHGISPEHLAK 263
           ++QVL+N+  NA+ A   H     G++ + T         W ++Q+ DNG GI      +
Sbjct: 555 LEQVLLNLLKNAAQAIHAHQVGEPGQIILRT----RLNPPWAEIQVEDNGGGIPENVRKR 610

Query: 264 IFDPFFTTKPVGVGTGLGLSIAFGIV-EKHQGKISVTSEVGQGTRFTLLFP 313
           IF+PFFTTK VG GTGLGLS+++ I+   HQG++ V  + G GT FTL  P
Sbjct: 611 IFEPFFTTKEVGQGTGLGLSVSYFIITNNHQGQMEVQCQPGHGTTFTLRLP 661